spatstat.core: ragsAreaInter – R documentation

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ragsAreaInter

Alternating Gibbs Sampler for Area-Interaction Process

Description

Generate a realisation of the area-interaction process using the alternating Gibbs sampler. Applies only when the interaction parameter eta is greater than 1.

Usage

ragsAreaInter(beta, eta, r, ...,
                   win = NULL, bmax = NULL, periodic = FALSE, ncycles = 100)

Arguments

`beta`	First order trend. A number, a pixel image (object of class `"im"`), or a `function(x,y)`.
`eta`	Interaction parameter (canonical form) as described in the help for `AreaInter`. A number greater than 1.
`r`	Disc radius in the model. A number greater than 1.
`...`	Additional arguments for `beta` if it is a function.
`win`	Simulation window. An object of class `"owin"`. (Ignored if `beta` is a pixel image.)
`bmax`	Optional. The maximum possible value of `beta`, or a number larger than this.
`periodic`	Logical value indicating whether to treat opposite sides of the simulation window as being the same, so that points close to one side may interact with points close to the opposite side. Feasible only when the window is a rectangle.
`ncycles`	Number of cycles of the alternating Gibbs sampler to be performed.

Details

This function generates a simulated realisation of the area-interaction process (see AreaInter) using the alternating Gibbs sampler (see rags).

It exploits a mathematical relationship between the (unmarked) area-interaction process and the two-type hard core process (Baddeley and Van Lieshout, 1995; Widom and Rowlinson, 1970). This relationship only holds when the interaction parameter eta is greater than 1 so that the area-interaction process is clustered.

The parameters beta,eta are the canonical parameters described in the help for AreaInter. The first order trend beta may be a constant, a function, or a pixel image.

The simulation window is determined by beta if it is a pixel image, and otherwise by the argument win (the default is the unit square).

Value

A point pattern (object of class "ppp").

Author(s)

Adrian Baddeley Adrian.Baddeley@curtin.edu.au.

References

Baddeley, A.J. and Van Lieshout, M.N.M. (1995). Area-interaction point processes. Annals of the Institute of Statistical Mathematics 47 (1995) 601–619.

Widom, B. and Rowlinson, J.S. (1970). New model for the study of liquid-vapor phase transitions. The Journal of Chemical Physics 52 (1970) 1670–1684.

Examples

plot(ragsAreaInter(100, 2, 0.07, ncycles=15))

spatstat.core

Core Functionality of the 'spatstat' Family

v2.1-2

GPL (>= 2)

Authors

Adrian Baddeley [aut, cre], Rolf Turner [aut], Ege Rubak [aut], Kasper Klitgaard Berthelsen [ctb], Achmad Choiruddin [ctb], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb], Julian Gilbey [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Kassel Hingee [ctb], Abdollah Jalilian [ctb], Marie-Colette van Lieshout [ctb], Greg McSwiggan [ctb], Tuomas Rajala [ctb], Suman Rakshit [ctb], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb]

Initial release

2021-04-17