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hamster

Aherne's hamster tumour data


Description

Point pattern of cell nuclei in hamster kidney, each nucleus classified as either ‘dividing’ or ‘pyknotic’. A multitype point pattern.

Usage

data(hamster)

Format

An object of class "ppp" representing the point pattern of cell locations. Entries include

x Cartesian x-coordinate of cell
y Cartesian y-coordinate of cell
marks factor with levels "dividing" and "pyknotic".

See ppp.object for details of the format.

Notes

These data were presented and analysed by Diggle (1983, section 7.3).

The data give the positions of the centres of the nuclei of certain cells in a histological section of tissue from a laboratory-induced metastasising lymphoma in the kidney of a hamster.

The nuclei are classified as either "pyknotic" (corresponding to dying cells) or "dividing" (corresponding to cells arrested in metaphase, i.e. in the act of dividing). The background void is occupied by unrecorded, interphase cells in relatively large numbers.

The sampling window is a square, originally about 0.25 mm square in real units, which has been rescaled to the unit square.

Source

Dr W. A. Aherne, Department of Pathology, University of Newcastle-upon-Tyne, UK. Data supplied by Prof. Peter Diggle

References

Diggle, P.J. (1983) Statistical analysis of spatial point patterns. Academic Press.


spatstat.data

Datasets for 'spatstat' Family

v2.1-0
GPL (>= 2)
Authors
Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>), W Aherne [ctb], Freda Alexander [ctb], Qi Wei Ang [ctb], Sourav Banerjee [ctb], Mark Berman [ctb], R Bernhardt [ctb], Thomas Berndtsen [ctb], Andrew Bevan [ctb], Jeffrey Betts [ctb], Ray Cartwright [ctb], Richard Condit [ctb], Francis Crick [ctb], Marcelino de la Cruz Rot [ctb], Jack Cuzick [ctb], Tilman Davies [ctb], Peter Diggle [ctb], Michael Drinkwater [ctb], Stephen Eglen [ctb], Robert Edwards [ctb], AE Esler [ctb], Gregory Evans [ctb], Bernard Fingleton [ctb], Olivier Flores [ctb], David Ford [ctb], Robin Foster [ctb], Janet Franklin [ctb], Neba Funwi-Gabga [ctb], DJ Gerrard [ctb], Andy Green [ctb], Tim Griffin [ctb], Ute Hahn [ctb], RD Harkness [ctb], Arthur Hickman [ctb], Stephen Hubbell [ctb], Austin Hughes [ctb], Jonathan Huntington [ctb], MJ Hutchings [ctb], Jackie Inwald [ctb], Valerie Isham [ctb], Aruna Jammalamadaka [ctb], Carl Knox-Robinson [ctb], Mahdieh Khanmohammadi [ctb], Tero Kokkila [ctb], Bas Kooijman [ctb], Kenneth Kosik [ctb], Peter Kovesi [ctb], Lily Kozmian-Ledward [ctb], Robert Lamb [ctb], NA Laskurain [ctb], George Leser [ctb], Marie-Colette van Lieshout [ctb], AF Mark [ctb], Jorge Mateu [ctb], Annikki Makela [ctb], Enrique Miranda [ctb], Nicoletta Nava [ctb], M Numata [ctb], Matti Nummelin [ctb], Jens Randel Nyengaard [ctb], Yosihiko Ogata [ctb], Si Palmer [ctb], Antti Penttinen [ctb], Sandra Pereira [ctb], Nicolas Picard [ctb], William Platt [ctb], Stephen Rathbun [ctb], Brian Ripley [ctb], Roger Sainsbury [ctb], Dietrich Stoyan [ctb], David Strauss [ctb], L Strand [ctb], Masaharu Tanemura [ctb], Graham Upton [ctb], Bill Venables [ctb], Sasha Voss [ctb], Rasmus Waagepetersen [ctb], Keith Watkins [ctb], H Wendrock [ctb]
Initial release
2021-03-16

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