Convert the format of a survfit object.
Add the point for a starting time (time 0) to a survfit object's elements. This is useful for plotting.
survfit0(x, start.time=0)
x |
a survfit object |
start.time |
the desired starting time; see details below. |
Survival curves are traditionally plotted forward from time 0, but
since the true starting time is not known as a part of the data,
the survfit
routine does not include a time 0 value in
the resulting object.
Someone might look at cumulative mortgage defaults versus calendar
year, for instance, with the ‘time’ value a Date object.
The plotted curve probably should not start at 0 = 1970/01/01.
Due to this uncertainty, it was decided not to include a "time 0" as
part of a survfit object. If the original survfit
call
included a start.time
argument, that value is of course
retained.
Whether that (1989) decision was wise or
foolish, it is now far too late to change it. (We tried it once as a
trial, resulting in over 20 errors in the survival test suite. We
extrapolate that it might break 1/2 - 2/3 of the other CRAN packages
that depend on survival, if made a default.)
If the original survfit
call
included a start.time
argument, that value is of course
retained.
One problem with this choice is that some functions must choose a
starting point, plots for example.
This utility function is used by plot.survfit
and
summary.survfit
to do so, adding a new time point at the front of each
curve in a consistent way: the optional argument to the survfit0
function as the first choice (if supplied),
then the user's start.time
if present,
otherwise min(0, x$time)
. The resulting object is not
guarranteed to work with functions that further manipulate a
survfit
object such as subscripting, aggregation, pseudovalues,
etc. (remember the 20 errors). Rather it is intended as a penultimate
step, most often when creating a plot.
a reformulated version of the object with an initial data point
at start.time
added.
The time
, surv
, pstate
, cumhaz
,
std.err
, std.cumhaz
and other components will all be aligned,
so as to make plots and summaries easier to produce.
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