survminer: BRCAOV.survInfo – R documentation

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BRCAOV.survInfo

Breast and Ovarian Cancers Survival Information

Description

Breat and Ovarian cancers survival information from the RTCGA.clinical R/Bioconductor package.http://rtcga.github.io/RTCGA/.

Usage

data("BRCAOV.survInfo")

Format

A data frame with 1674 rows and 4 columns.

- times: follow-up time;
 - bcr_patient_barcode: Patient bar code;
 - patient.vital_status = survival status. 0 = alive, 1 = dead;
 - admin.disease_code: disease code. brca = breast cancer, ov = ovarian
 cancer.

Source

From the RTCGA.clinical R/Bioconductor package. The data is generated as follow:

# Installing RTCGA.clinical
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.clinical")

# Generating the BRCAOV survival information
library(RTCGA.clinical)
survivalTCGA(BRCA.clinical, OV.clinical,
extract.cols = "admin.disease_code") -> BRCAOV.survInfo

Examples

data(BRCAOV.survInfo)
library(survival)
fit <- survfit(Surv(times, patient.vital_status) ~ admin.disease_code,
           data = BRCAOV.survInfo)
ggsurvplot(fit, data = BRCAOV.survInfo, risk.table = TRUE)

survminer

Drawing Survival Curves using 'ggplot2'

v0.4.9

GPL-2

Authors

Alboukadel Kassambara [aut, cre], Marcin Kosinski [aut], Przemyslaw Biecek [aut], Scheipl Fabian [ctb]

Initial release

2021-03-09