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kidney

Intensity data for one cDNA slide with two adjacent tissue samples from a nephrectomy (kidney)


Description

Intensity data for one cDNA slide with two adjacent tissue samples from a nephrectomy (kidney)

Usage

data(kidney)

Format

kidney is an ExpressionSet containing the data from one cDNA chip. The 8704x2 matrix exprs(kidney) contains the spot intensities for the red (635 nm) and green color channels (532 nm) respectively. For each spot, a background estimate from a surrounding region was subtracted.

Details

The chip was produced in 2001 by Holger Sueltmann at the Division of Molecular Genome Analysis at the German Cancer Research Center in Heidelberg.

References

Huber W, Boer JM, von Heydebreck A, Gunawan B, Vingron M, Fuzesi L, Poustka A, Sueltmann H. Transcription profiling of renal cell carcinoma. Verh Dtsch Ges Pathol. 2002;86:153-64. PMID: 12647365

Examples

data("kidney")
 plot(exprs(kidney), pch = ".", log = "xy")
 abline(a = 0, b = 1, col = "blue")

vsn

Variance stabilization and calibration for microarray data

v3.58.0
Artistic-2.0
Authors
Wolfgang Huber, with contributions from Anja von Heydebreck. Many comments and suggestions by users are acknowledged, among them Dennis Kostka, David Kreil, Hans-Ulrich Klein, Robert Gentleman, Deepayan Sarkar and Gordon Smyth
Initial release

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