Create Export Tables
Convert an R object to an xtable
object, which can
then be printed as a LaTeX or HTML table.
xtable(x, caption = NULL, label = NULL, align = NULL, digits = NULL, display = NULL, auto = FALSE, ...)
x |
An R object of class found among |
caption |
Character vector of length 1 or 2 containing the
table's caption or title. If length is 2, the second item is the
"short caption" used when LaTeX generates a "List of Tables". Set to
|
label |
Character vector of length 1 containing the LaTeX label
or HTML anchor. Set to |
align |
Character vector of length equal to the number of columns
of the resulting table, indicating the alignment of the corresponding
columns. Also, |
digits |
Numeric vector of length equal to one (in which case it will be
replicated as necessary) or to the number of columns of the
resulting table or matrix of the same size as the resulting
table, indicating the number of digits to display in the
corresponding columns. Since the row names are printed in the first
column, the length of the vector |
display |
Character vector of length equal to the number of columns of the
resulting table, indicating the format for the corresponding columns.
Since the row names are printed in the first column, the length of
|
auto |
Logical, indicating whether to apply automatic format when no value
is passed to |
... |
Additional arguments. (Currently ignored.) |
This function extracts tabular information from x
and returns
an object of class "xtable"
. The nature of the table generated
depends on the class of x
. For example, aov
objects
produce ANOVA tables while data.frame
objects produce a table
of the entire data frame. One can optionally provide a caption
or label (called an anchor in HTML), as well
as formatting specifications. Default values for align
,
digits
, and display
are class dependent.
The available method functions for xtable
are given by
methods(xtable)
. Users can extend the list of available
classes by writing methods for the generic function xtable
.
These methods functions should have x
as their first argument,
with additional arguments to specify caption
, label
,
align
, digits
, and display
. Optionally, other
arguments may be passed to specify how the object x
should be
manipulated. All method functions should return an object whose class
is c("xtable","data.frame")
. The resulting object can
have attributes caption
and label
, but must have
attributes align
, digits
, and display
.
For most xtable
methods, an object of class "xtable"
which inherits the data.frame
class and contains several
additional attributes specifying the table formatting options.
David Dahl dahl@stat.byu.edu with contributions and suggestions from many others (see source code).
## Load example dataset data(tli) ## Demonstrate data.frame tli.table <- xtable(tli[1:20, ]) print(tli.table) print(tli.table, type = "html") xtable(mtcars) xtable(mtcars, auto = TRUE) ## Demonstrate data.frame with different digits in cells tli.table <- xtable(tli[1:20, ]) display(tli.table)[c(2,6)] <- "f" digits(tli.table) <- matrix(0:4, nrow = 20, ncol = ncol(tli)+1) print(tli.table) print(tli.table, type = "html") ## Demonstrate matrix design.matrix <- model.matrix(~ sex*grade, data = tli[1:20, ]) design.table <- xtable(design.matrix, auto = TRUE) print(design.table) print(design.table, type = "html") ## Demonstrate aov fm1 <- aov(tlimth ~ sex + ethnicty + grade + disadvg, data = tli) fm1.table <- xtable(fm1) print(fm1.table) print(fm1.table, type = "html") ## Demonstrate lm fm2 <- lm(tlimth ~ sex*ethnicty, data = tli) fm2.table <- xtable(fm2) print(fm2.table) print(fm2.table, type = "html") print(xtable(anova(fm2))) print(xtable(anova(fm2)), type = "html") fm2b <- lm(tlimth ~ ethnicty, data = tli) print(xtable(anova(fm2b, fm2))) print(xtable(anova(fm2b, fm2)), type = "html") ## Demonstrate glm fm3 <- glm(disadvg ~ ethnicty*grade, data = tli, family = binomial()) fm3.table <- xtable(fm3) print(fm3.table) print(fm3.table, type = "html") print(xtable(anova(fm3))) print(xtable(anova(fm3)), type = "html") ## Demonstrate aov ## Taken from help(aov) in R 1.1.1 ## From Venables and Ripley (1997) p.210. N <- c(0,1,0,1,1,1,0,0,0,1,1,0,1,1,0,0,1,0,1,0,1,1,0,0) P <- c(1,1,0,0,0,1,0,1,1,1,0,0,0,1,0,1,1,0,0,1,0,1,1,0) K <- c(1,0,0,1,0,1,1,0,0,1,0,1,0,1,1,0,0,0,1,1,1,0,1,0) yield <- c(49.5,62.8,46.8,57.0,59.8,58.5,55.5,56.0,62.8,55.8,69.5,55.0, 62.0,48.8,45.5,44.2,52.0,51.5,49.8,48.8,57.2,59.0,53.2,56.0) npk <- data.frame(block = gl(6,4), N = factor(N), P = factor(P), K = factor(K), yield = yield) npk.aov <- aov(yield ~ block + N*P*K, npk) op <- options(contrasts = c("contr.helmert", "contr.treatment")) npk.aovE <- aov(yield ~ N*P*K + Error(block), npk) options(op) summary(npk.aov) print(xtable(npk.aov)) print(xtable(anova(npk.aov))) print(xtable(summary(npk.aov))) summary(npk.aovE) print(xtable(npk.aovE), type = "html") print(xtable(summary(npk.aovE)), type = "html") ## Demonstrate lm ## Taken from help(lm) in R 1.1.1 ## Annette Dobson (1990) "An Introduction to Generalized Linear Models". ## Page 9: Plant Weight Data. ctl <- c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14) trt <- c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69) group <- gl(2,10,20, labels = c("Ctl","Trt")) weight <- c(ctl, trt) lm.D9 <- lm(weight ~ group) print(xtable(lm.D9)) print(xtable(anova(lm.D9))) ## Demonstrate glm ## Taken from help(glm) in R 1.1.1 ## Annette Dobson (1990) "An Introduction to Generalized Linear Models". ## Page 93: Randomized Controlled Trial : counts <- c(18,17,15,20,10,20,25,13,12) outcome <- gl(3,1,9) treatment <- gl(3,3) d.AD <- data.frame(treatment, outcome, counts) glm.D93 <- glm(counts ~ outcome + treatment, family = poisson()) print(xtable(glm.D93, align = "r|llrc")) print(xtable(anova(glm.D93)), hline.after = c(1), size = "small") ## Demonstration of additional formatC() arguments. print(fm1.table, format.args = list(big.mark = "'", decimal.mark = ",")) ## Demonstration of "short caption" support. fm1sc <- aov(tlimth ~ sex + ethnicty + grade, data = tli) fm1sc.table <- xtable(fm1sc, caption = c("ANOVA Model with Predictors Sex, Ethnicity, and Grade", "ANOVA: Sex, Ethnicity, Grade")) print(fm1sc.table) ## Demonstration of longtable support. ## Remember to insert \usepackage{longtable} on your LaTeX preamble x <- matrix(rnorm(1000), ncol = 10) x.big <- xtable(x, label = 'tabbig', caption = 'Example of longtable spanning several pages') print(x.big, tabular.environment = 'longtable', floating = FALSE) x <- x[1:30, ] x.small <- xtable(x, label = 'tabsmall', caption = 'regular table env') print(x.small) # default, no longtable ## Demonstration of sidewaystable support. ## Remember to insert \usepackage{rotating} on your LaTeX preamble print(x.small, floating.environment = 'sidewaystable') if(require(stats, quietly = TRUE)) { ## Demonstrate prcomp ## Taken from help(prcomp) in mva package of R 1.1.1 data(USArrests) pr1 <- prcomp(USArrests) print(xtable(pr1)) print(xtable(summary(pr1))) # ## Demonstrate princomp # ## Taken from help(princomp) in mva package of R 1.1.1 # pr2 <- princomp(USArrests) # print(xtable(pr2)) } ## Demonstrate include.rownames, include.colnames, ## only.contents and add.to.row arguments set.seed(2345) res <- matrix(sample(0:9, size = 6*9, replace = TRUE), ncol = 6, nrow = 9) xres <- xtable(res) digits(xres) <- rep(0, 7) addtorow <- list() addtorow$pos <- list() addtorow$pos[[1]] <- c(0, 2) addtorow$pos[[2]] <- 4 addtorow$command <- c('\vspace{2mm} \n', '\vspace{10mm} \n') print(xres, add.to.row = addtorow, include.rownames = FALSE, include.colnames = TRUE, only.contents = TRUE, hline.after = c(0, 0, 9, 9)) ## Demonstrate include.rownames, include.colnames, ## only.contents and add.to.row arguments in Rweave files ## Not run: \begin{small} \setlongtables \begin{longtable}{ <<results = tex, fig = FALSE>>= cat(paste(c('c', rep('cc', 34/2-1), 'c'), collapse = '@{\hspace{2pt}}')) @ } \hline \endhead \hline \endfoot <<results = tex, fig = FALSE>>= library(xtable) set.seed(2345) res <- matrix(sample(0:9, size = 34*90, replace = TRUE), ncol = 34, nrow = 90) xres <- xtable(res) digits(xres) <- rep(0, 35) addtorow <- list() addtorow$pos <- list() addtorow$pos[[1]] <- c(seq(4, 40, 5), seq(49, 85, 5)) addtorow$pos[[2]] <- 45 addtorow$command <- c('\vspace{2mm} \n', '\newpage \n') print(xres, add.to.row = addtorow, include.rownames = FALSE, include.colnames = FALSE, only.contents = TRUE, hline.after = NULL) @ \end{longtable} \end{small} ## End(Not run) ## Demonstrate sanitization mat <- round(matrix(c(0.9, 0.89, 200, 0.045, 2.0), c(1, 5)), 4) rownames(mat) <- "$y_{t-1}$" colnames(mat) <- c("$R^2$", "$\\bar{R}^2$", "F-stat", "S.E.E", "DW") print(xtable(mat), type = "latex", sanitize.text.function = function(x){x}) ## Demonstrate booktabs print(tli.table) print(tli.table, hline.after = c(-1,0)) print(tli.table, hline.after = NULL) print(tli.table, add.to.row = list(pos = list(2), command = c("\vspace{2mm} \n"))) print(tli.table, booktabs = TRUE) print(tli.table, booktabs = TRUE, hline.after = c(-1,0)) print(tli.table, booktabs = TRUE, hline.after = NULL) print(tli.table, booktabs = TRUE, add.to.row = list(pos = list(2), command = c("\vspace{2mm} \n"))) print(tli.table, booktabs = TRUE, add.to.row = list(pos = list(2), command = c("youhou\n")), tabular.environment = "longtable")
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