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as.yaml

Convert an R object into a YAML string


Description

Convert an R object into a YAML string

Usage

as.yaml(x, line.sep = c("\n", "\r\n", "\r"), indent = 2, omap = FALSE,
          column.major = TRUE, unicode = TRUE, precision = getOption('digits'),
          indent.mapping.sequence = FALSE, handlers = NULL)

Arguments

x

the object to be converted

line.sep

the line separator character(s) to use

indent

the number of spaces to use for indenting

omap

determines whether or not to convert a list to a YAML omap; see Details

column.major

determines how to convert a data.frame; see Details

unicode

determines whether or not to allow unescaped unicode characters in output

precision

number of significant digits to use when formatting numeric values

indent.mapping.sequence

determines whether or not to indent sequences in mapping context

handlers

named list of custom handler functions for R objects; see Details

Details

If you set the omap option to TRUE, as.yaml will create ordered maps (or omaps) instead of normal maps.

The column.major option determines how a data frame is converted. If TRUE, the data frame is converted into a map of sequences where the name of each column is a key. If FALSE, the data frame is converted into a sequence of maps, where each element in the sequence is a row. You'll probably almost always want to leave this as TRUE (which is the default), because using yaml.load on the resulting string returns an object which is much more easily converted into a data frame via as.data.frame.

You can specify custom handler functions via the handlers argument. This argument must be a named list of functions, where the names are R object class names (i.e., 'numeric', 'data.frame', 'list', etc). The function(s) you provide will be passed one argument (the R object) and can return any R object. The returned object will be emitted normally.

Character vectors that have a class of ‘verbatim’ will not be quoted in the output YAML document except when the YAML specification requires it. This means that you cannot do anything that would result in an invalid YAML document, but you can emit strings that would otherwise be quoted. This is useful for changing how logical vectors are emitted (see below for example).

You can specify YAML tags for R objects by setting the ‘tag’ attribute to a character vector of length 1. If you set a tag for a vector, the tag will be applied to the YAML sequence as a whole, unless the vector has only 1 element. If you wish to tag individual elements, you must use a list of 1-length vectors, each with a tag attribute. Likewise, if you set a tag for an object that would be emitted as a YAML mapping (like a data frame or a named list), it will be applied to the mapping as a whole. Tags can be used in conjunction with YAML deserialization functions like yaml.load via custom handlers, however, if you set an internal tag on an incompatible data type (like “!seq 1.0”), errors will occur when you try to deserialize the document.

Value

Returns a YAML string which can be loaded using yaml.load or copied into a file for external use.

Author(s)

Jeremy Stephens <jeremy.f.stephens@vumc.org>

References

YAML: http://yaml.org

YAML omap type: http://yaml.org/type/omap.html

See Also

Examples

as.yaml(1:10)
  as.yaml(list(foo=1:10, bar=c("test1", "test2")))
  as.yaml(list(foo=1:10, bar=c("test1", "test2")), indent=3)
  as.yaml(list(foo=1:10, bar=c("test1", "test2")), indent.mapping.sequence=TRUE)
  as.yaml(data.frame(a=1:10, b=letters[1:10], c=11:20))
  as.yaml(list(a=1:2, b=3:4), omap=TRUE)
  as.yaml("multi\nline\nstring")
  as.yaml(function(x) x + 1)
  as.yaml(list(foo=list(list(x = 1, y = 2), list(x = 3, y = 4))))

  # custom handler
  as.yaml(Sys.time(), handlers = list(
    POSIXct = function(x) format(Sys.time(), "%Y-%m-%d")
  ))

  # custom handler with verbatim output to change how logical vectors are
  # emitted
  as.yaml(c(TRUE, FALSE), handlers = list(
    logical = function(x) {
      result <- ifelse(x, "true", "false")
      class(result) <- "verbatim"
      return(result)
    }
  ))

  # custom tag for scalar
  x <- "thing"
  attr(x, "tag") <- "!thing"
  as.yaml(x)

  # custom tag for sequence
  x <- 1:10
  attr(x, "tag") <- "!thing"
  as.yaml(x)

  # custom tag for mapping
  x <- data.frame(a = letters[1:5], b = letters[6:10])
  attr(x, "tag") <- "!thing"
  as.yaml(x)

  # custom tag for each element in a list
  x <- list(1, 2, 3)
  attr(x[[1]], "tag") <- "!a"
  attr(x[[2]], "tag") <- "!b"
  attr(x[[3]], "tag") <- "!c"
  as.yaml(x)

yaml

Methods to Convert R Data to YAML and Back

v2.2.1
BSD_3_clause + file LICENSE
Authors
Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb]
Initial release
2020-01-23

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