Plotting zoo Objects
Plotting method for objects of class "zoo"
.
## S3 method for class 'zoo' plot(x, y = NULL, screens, plot.type, panel = lines, xlab = "Index", ylab = NULL, main = NULL, xlim = NULL, ylim = NULL, xy.labels = FALSE, xy.lines = NULL, yax.flip = FALSE, oma = c(6, 0, 5, 0), mar = c(0, 5.1, 0, if(yax.flip) 5.1 else 2.1), col = 1, lty = 1, lwd = 1, pch = 1, type = "l", log = "", nc, widths = 1, heights = 1, ...) ## S3 method for class 'zoo' lines(x, y = NULL, type = "l", ...) ## S3 method for class 'zoo' points(x, y = NULL, type = "p", ...)
x |
an object of class |
y |
an object of class |
screens |
factor (or coerced to factor) whose levels specify which
graph each series is to be plotted in. |
plot.type |
for multivariate zoo objects, "multiple" plots the
series on multiple plots and "single" superimposes them on a single
plot. Default is "single" if |
panel |
a |
ylim |
if |
xy.labels |
logical, indicating if |
xy.lines |
logical, indicating if |
yax.flip |
logical, indicating if the y-axis (ticks and numbering)
should flip from side 2 (left) to 4 (right) from series to series
when |
xlab, ylab, main, xlim, oma, mar |
graphical arguments, see |
col, lty, lwd, pch, type |
graphical arguments that can be vectors or (named) lists. See the details for more information. |
log |
specification of log scales as |
nc |
the number of columns to use when |
widths, heights |
widths and heights for individual graphs, see
|
... |
additional graphical arguments. |
The methods for plot
and lines
are very similar
to the corresponding ts
methods. However, the handling of
several graphical parameters is more flexible for multivariate series.
These parameters can be vectors of the same length as the number of
series plotted or are recycled if shorter. They can also be (partially)
named list, e.g., list(A = c(1,2), c(3,4))
in which c(3, 4)
is the default value and c(1, 2)
the value only for series A
.
The screens
argument can be specified in a similar way.
If plot.type
and screens
conflict then multiple plots
will be assumed. Also see the examples.
In the case of a custom panel the panel can reference
parent.frame$panel.number
in order to determine which
frame the panel is being called from. See examples.
par(mfrow=...)
and Axis
can be used in conjunction with
single panel plots in the same way as with other classic graphics.
For multi-panel graphics, plot.zoo
takes over the layout so
par(mfrow=...)
cannot be used. Axis
can be used within
the panels themselves but not outside the panel. See examples.
Also, par(new = TRUE)
is not supported for multi-panel graphics.
## example dates x.Date <- as.Date(paste(2003, 02, c(1, 3, 7, 9, 14), sep = "-")) ## univariate plotting x <- zoo(rnorm(5), x.Date) x2 <- zoo(rnorm(5, sd = 0.2), x.Date) plot(x) lines(x2, col = 2) ## multivariate plotting z <- cbind(x, x2, zoo(rnorm(5, sd = 0.5), x.Date)) plot(z, type = "b", pch = 1:3, col = 1:3, ylab = list(expression(mu), "b", "c")) colnames(z) <- LETTERS[1:3] plot(z, screens = 1, col = list(B = 2)) plot(z, type = "b", pch = 1:3, col = 1:3) plot(z, type = "b", pch = list(A = 1:5, B = 3), col = list(C = 4, 2)) plot(z, type = "b", screen = c(1,2,1), col = 1:3) # right axis is for broken lines plot(x) opar <- par(usr = c(par("usr")[1:2], range(x2))) lines(x2, lty = 2) # axis(4) axis(side = 4) par(opar) ## Custom x axis labelling using a custom panel. # 1. test data z <- zoo(c(21, 34, 33, 41, 39, 38, 37, 28, 33, 40), as.Date(c("1992-01-10", "1992-01-17", "1992-01-24", "1992-01-31", "1992-02-07", "1992-02-14", "1992-02-21", "1992-02-28", "1992-03-06", "1992-03-13"))) zz <- merge(a = z, b = z+10) # 2. axis tick for every point. Also every 3rd point labelled. my.panel <- function(x, y, ..., pf = parent.frame()) { fmt <- "%b-%d" # format for axis labels lines(x, y, ...) # if bottom panel if (with(pf, length(panel.number) == 0 || panel.number %% nr == 0 || panel.number == nser)) { # create ticks at x values and then label every third tick axis(side = 1, at = x, labels = FALSE) ix <- seq(1, length(x), 3) labs <- format(x, fmt) axis(side = 1, at = x[ix], labels = labs[ix], tcl = -0.7, cex.axis = 0.7) } } # 3. plot plot(zz, panel = my.panel, xaxt = "n") # with a single panel plot a fancy x-axis is just the same # procedure as for the ordinary plot command plot(zz, screen = 1, col = 1:2, xaxt = "n") # axis(1, at = time(zz), labels = FALSE) tt <- time(zz) axis(side = 1, at = tt, labels = FALSE) ix <- seq(1, length(tt), 3) fmt <- "%b-%d" # format for axis labels labs <- format(tt, fmt) # axis(1, at = time(zz)[ix], labels = labs[ix], tcl = -0.7, cex.axis = 0.7) axis(side = 1, at = tt[ix], labels = labs[ix], tcl = -0.7, cex.axis = 0.7) legend("bottomright", colnames(zz), lty = 1, col = 1:2) ## plot a mulitple ts series with nice x-axis using panel function tab <- ts(cbind(A = 1:24, B = 24:1), start = c(2006, 1), freq = 12) pnl.xaxis <- function(...) { lines(...) panel.number <- parent.frame()$panel.number nser <- parent.frame()$nser # if bottom panel if (!length(panel.number) || panel.number == nser) { tt <- list(...)[[1]] ym <- as.yearmon(tt) mon <- as.numeric(format(ym, "%m")) yy <- format(ym, "%y") mm <- substring(month.abb[mon], 1, 1) if (any(mon == 1)) # axis(1, tt[mon == 1], yy[mon == 1], cex.axis = 0.7) axis(side = 1, at = tt[mon == 1], labels = yy[mon == 1], cex.axis = 0.7) # axis(1, tt[mon > 1], mm[mon > 1], cex.axis = 0.5, tcl = -0.3) axis(side = 1, at = tt[mon > 1], labels = mm[mon > 1], cex.axis = 0.5, tcl = -0.3) } } plot(as.zoo(tab), panel = pnl.xaxis, xaxt = "n", main = "Fancy X Axis") ## Another example with a custom axis # test data z <- zoo(matrix(1:25, 5), c(10,11,20,21)) colnames(z) <- letters[1:5] plot(zoo(coredata(z)), xaxt = "n", panel = function(x, y, ..., Time = time(z)) { lines(x, y, ...) # if bottom panel pf <- parent.frame() if (with(pf, panel.number %% nr == 0 || panel.number == nser)) { axis(side = 1, at = x, labels = Time) } }) ## plot with left and right axes ## modified from http://www.mayin.org/ajayshah/KB/R/html/g6.html suppressWarnings(RNGversion("3.5.0")) set.seed(1) z <- zoo(cbind(A = cumsum(rnorm(100)), B = cumsum(rnorm(100, mean = 0.2)))) opar <- par(mai = c(.8, .8, .2, .8)) plot(z[,1], type = "l", xlab = "x-axis label", ylab = colnames(z)[1]) par(new = TRUE) plot(z[,2], type = "l", ann = FALSE, yaxt = "n", col = "blue") # axis(4) axis(side = 4) legend(x = "topleft", bty = "n", lty = c(1,1), col = c("black", "blue"), legend = paste(colnames(z), c("(left scale)", "(right scale)"))) usr <- par("usr") # if you don't care about srt= in text then mtext is shorter: # mtext(colnames(z)[2], 4, 2, col = "blue") text(usr[2] + .1 * diff(usr[1:2]), mean(usr[3:4]), colnames(z)[2], srt = -90, xpd = TRUE, col = "blue") par(opar) ## another plot with left and right axes ## modified from https://stat.ethz.ch/pipermail/r-help/2014-May/375293.html d1 <- c(38.2, 18.1, 83.2, 42.7, 22.8, 48.1, 81.8, 129.6, 52.0, 110.3) d2 <- c(2.2, 0.8, 0.7, 1.6, 0.9, 0.9, 1.1, 2.8, 5.1, 2.1) z1 <- zooreg(d1, start = as.POSIXct("2013-01-01 00:00:01"), frequency = 0.0000006) z2 <- zooreg(d2, start = as.POSIXct("2013-01-01 00:00:20"), frequency = 0.0000006) zt <- zooreg(rnorm(1050), start = as.POSIXct("2013-01-01 00:00:01"), frequency = 0.00007) z <- merge(zt, z1, z2, all = TRUE) z <- na.spline(z[,2:3], na.rm = FALSE) ## function to round up to a number divisible by n (2011 by Owen Jones) roundup <- function(x, n) ceiling(ceiling(x)/n) * n ## plot how to match secondary y-axis ticks to primary ones plot(z$z1, ylim = c(0, signif(max(na.omit(z$z1)), 2)), xlab = "") ## use multiplication for even tick numbers and fake sekondary y-axis max.yl <- roundup(max(na.omit(z$z2)), par("yaxp")[3]) multipl.yl <- max(na.omit(z$z2)) / max.yl multipl.z2 <- signif(max(na.omit(z$z1) * 1.05), 2)/max.yl lines(z$z2 * multipl.z2, lty = 2) at4 <- axTicks(4) axis(4, at = at4, seq(0, max.yl, length.out = par("yaxp")[3] + 1)) # automatically placed point labels ## Not run: library("maptools") pointLabel(time(z), coredata(z[,2]), labels = format(time(z)), cex = 0.5) ## End(Not run) ## plot one zoo series against the other. plot(x, x2) plot(x, x2, xy.labels = TRUE) plot(x, x2, xy.labels = 1:5, xy.lines = FALSE) ## shade a portion of a plot and make axis fancier v <- zooreg(rnorm(50), start = as.yearmon(2004), freq = 12) plot(v, type = "n") u <- par("usr") rect(as.yearmon("2007-8"), u[3], as.yearmon("2009-11"), u[4], border = 0, col = "grey") lines(v) axis(1, floor(time(v)), labels = FALSE, tcl = -1) ## shade certain times to show recessions, etc. v <- zooreg(rnorm(50), start = as.yearmon(2004), freq = 12) plot(v, type = "n") u <- par("usr") rect(as.yearmon("2007-8"), u[3], as.yearmon("2009-11"), u[4], border = 0, col = "grey") lines(v) axis(1, floor(time(v)), labels = FALSE, tcl = -1) ## fill area under plot pnl.xyarea <- function(x, y, fill.base = 0, col = 1, ...) { lines(x, y, ...) panel.number <- parent.frame()$panel.number col <- rep(col, length = panel.number)[panel.number] polygon(c(x[1], x, tail(x, 1), x[1]), c(fill.base, as.numeric(y), fill.base, fill.base), col = col) } plot(zoo(EuStockMarkets), col = rainbow(4), panel = pnl.xyarea) ## barplot x <- zoo(cbind(rpois(5, 2), rpois(5, 3)), x.Date) barplot(x, beside = TRUE) ## boxplot boxplot(x) ## 3d plot ## The persp function in R (not part of zoo) works with zoo objects. ## The following example is by Enrico Schumann. ## https://stat.ethz.ch/pipermail/r-sig-finance/2009q1/003710.html nC <- 10 # columns nO <- 100 # observations dataM <- array(runif(nC * nO), dim=c(nO, nC)) zz <- zoo(dataM, 1:nO) persp(1:nO, 1:nC, zz) # interactive plotting ## Not run: library("TeachingDemos") tke.test1 <- list(Parameters = list( lwd = list("spinbox", init = 1, from = 0, to = 5, increment = 1, width = 5), lty = list("spinbox", init = 1, from = 0, to = 6, increment = 1, width = 5) )) z <- zoo(rnorm(25)) tkexamp(plot(z), tke.test1, plotloc = "top") ## End(Not run) # setting ylim on a multi-panel plot - 2nd panel y axis range is 1-50 data("anscombe", package = "datasets") ans6 <- zoo(anscombe[, 1:6]) screens <- c(1, 1, 2, 2, 3, 3) ylim <- unname(tapply(as.list(ans6), screens, range)) ylim[[2]] <- 1:50 # or ylim[[2]] <- c(1, 50) plot(ans6, screens = screens, ylim = ylim)
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