KEGGFrame objects
These objects each contain a data frame which is required to be
composed of 2 columns. The 1st column are KEGG IDs. The second are
the gene IDs that match to the KEGG IDs. There is also a slot for the
organism that these anotations pertain to. getKEGGFrameData is
just an accessor method and returns the data.frame contained in the
KEGGFrame object and is mostly used by other code internally.
The purpose of these objects is to create a safe way for annotation data about KEGG from non-traditional sources to be used for analysis packages like GSEABase and eventually Category.
## Make up an example
genes = c(2,9,9,10)
KEGGIds = c("04610","00232","00983","00232")
frameData = data.frame(cbind(KEGGIds,genes))
library(AnnotationDbi)
frame=KEGGFrame(frameData,organism="Homo sapiens")
getKEGGFrameData(frame)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.