AnnotationDbi: makeGOGraph – R documentation

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makeGOGraph

A convenience function to generate graphs based on the GO.db package

Description

makeGOGraph is a function to quickly convert any of the three Gene Ontologies in GO.db into a graphNEL object where each edge is given a weight of 1.

Usage

makeGOGraph(ont = c("bp","mf","cc"))

Arguments

ont

Specifies the ontology: "cc", "bp" or "mf".

Author(s)

Marc Carlson

Examples

## makes a GO graph from the CC ontology 
  f <- makeGOGraph("cc")

AnnotationDbi

Manipulation of SQLite-based annotations in Bioconductor

v1.52.0

Artistic-2.0

Authors

Hervé Pagès, Marc Carlson, Seth Falcon, Nianhua Li

Initial release