Create an SQLite-based annotation package
Create an SQLite-based annotation package from an SQLite file.
makeAnnDbPkg(x, dbfile, dest_dir=".", no.man=FALSE, ...) loadAnnDbPkgIndex(file)
x |
A AnnDbPkgSeed object, a list, a string or a regular expression. |
dbfile |
The path to the SQLite containing the annotation data for the package to build. |
dest_dir |
The directory where the package will be created. |
file |
The path to a DCF file containing the list of annotation packages to build. |
no.man |
If |
... |
Extra args used for extra filtering. |
## With a "AnnDbPkgSeed" object:
seed <- new("AnnDbPkgSeed",
Package="hgu133a2.db",
Version="0.0.99",
PkgTemplate="HUMANCHIP.DB",
AnnObjPrefix="hgu133a2"
)
if (FALSE)
makeAnnDbPkg(seed, "path/to/hgu133a2.sqlite")
## With package names:
## (Note that in this case makeAnnDbPkg() will use the package descriptions
## found in the master index file ANNDBPKG-INDEX.TXT located in the
## AnnotationDbi package.)
if (FALSE)
makeAnnDbPkg(c("hgu95av2.db", "hgu133a2.db"))
## A character vector of length 1 is treated as a regular expression:
if (FALSE)
makeAnnDbPkg("hgu.*")
## To make all the packages described in the master index:
if (FALSE)
makeAnnDbPkg("")
## Extra args can be used to narrow down the roaster of packages to make:
if (FALSE) {
makeAnnDbPkg("", PkgTemplate="HUMANCHIP.DB", manufacturer="Affymetrix")
makeAnnDbPkg(".*[3k]\\.db", species=c("Mouse", "Rat"))
}
## The master index file ANNDBPKG-INDEX.TXT can be loaded with:
loadAnnDbPkgIndex()Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.