Read a 1lq file for an Affymetrix genechip
Read a 1lq file for an Affymetrix genechip
getProbeData_1lq(arraytype, datafile, pkgname = NULL)
arraytype |
Character. Array type (e.g. 'Scerevisiaetiling) |
datafile |
Character. The filename of the input data file.
If omitted a default name is constructed from |
pkgname |
Character. Package name. If NULL the name is derived
from |
This function serves as an interface between
the (1) representation of array probe information data in the packages
that are generated by makeProbePackage and (2) the
vendor- and possibly version-specific way the data are represented
in datafile.
A list with three components
dataEnv |
an environment which contains the data frame with the probe sequences and the other probe data. |
symVal |
a named list of symbol value substitutions which can
be used to customize the man pages. See
|
pkgname |
a character with the package name; will be the same
as the function parameter |
makeProbePackage
## makeProbePackage( ## arraytype = "Scerevisiaetiling", ## maintainer= "Wolfgang Huber <huber@ebi.ac.uk>", ## version = "1.1.0", ## datafile = "S.cerevisiae_tiling.1lq", ## importfun = "getProbeData_1lq")
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