Convert GSEABase classes to a TidySet
Convert GSEABase classes to a TidySet
tidy(object) ## S3 method for class 'GeneSetCollection' tidy(object) ## S3 method for class 'GeneSet' tidy(object)
object |
A GeneSetCollection or a GeneSet derived object |
A TidySet object
GeneSetCollection
: Converts to a tidySet given a GeneSetCollection
GeneSet
: Converts to a tidySet given a GeneSet
if (requireNamespace("GSEABase")) { library("GSEABase") gs <- GeneSet() gs tidy(gs) fl <- system.file("extdata", "Broad.xml", package="GSEABase") gs2 <- getBroadSets(fl) # actually, a list of two gene sets TS <- tidy(gs2) dim(TS) sets(TS) }
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