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tidy

Convert GSEABase classes to a TidySet


Description

Convert GSEABase classes to a TidySet

Usage

tidy(object)

## S3 method for class 'GeneSetCollection'
tidy(object)

## S3 method for class 'GeneSet'
tidy(object)

Arguments

object

A GeneSetCollection or a GeneSet derived object

Value

A TidySet object

Methods (by class)

  • GeneSetCollection: Converts to a tidySet given a GeneSetCollection

  • GeneSet: Converts to a tidySet given a GeneSet

Examples

if (requireNamespace("GSEABase")) {
    library("GSEABase")
    gs <- GeneSet()
    gs
    tidy(gs)
    fl <- system.file("extdata", "Broad.xml", package="GSEABase")
    gs2 <- getBroadSets(fl) # actually, a list of two gene sets
    TS <- tidy(gs2)
    dim(TS)
    sets(TS)
}

BaseSet

Working with Sets the Tidy Way

v0.0.16
MIT + file LICENSE
Authors
Lluís Revilla Sancho [aut, cre] (<https://orcid.org/0000-0001-9747-2570>), Zebulun Arendsee [rev], Jennifer Chang [rev]
Initial release

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