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normTransform

Normalized counts transformation

Description

A simple function for creating a DESeqTransform object after applying: f(count(dds,normalized=TRUE) + pc).

Usage

normTransform(object, f = log2, pc = 1)

Arguments

object

a DESeqDataSet object
f

a function to apply to normalized counts
pc

a pseudocount to add to normalized counts

See Also

DESeq2

Differential gene expression analysis based on the negative binomial distribution

v1.30.1
LGPL (>= 3)
Authors
Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb]
Initial release

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