Description

These functions/methods are removed.

Details

plotImsSlice

use plotMsiSlice instead.

totalIonCurrent

signature(object = "MassPeaks"): removed.

totalIonCurrent<-

signature(object = "AbstractMassObject", value = "numeric"): use calibrateIntensity instead.

calibrate

signature(x = "matrix"): use calibrateIntensity instead.

standardizeTotalIonCurrent

signature(object = "list"): use calibrateIntensity instead.

ltrim

signature(object = "AbstractMassObject", minMass = "numeric"): use trim instead.

rtrim

use trim instead.

mergeMassSpectra

use averageMassSpectra instead.

movingAverage

use smoothIntensity instead.

savitzkyGolay

use smoothIntensity instead.

isMassObject

removed.

isMassObjectList

removed.

intensityMatrix

does not support MassSpectrum objects anymore.