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SummarizedExperiment

SummarizedExperiment container

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Functions (12)

Assays-class

Assays objects

RangedSummarizedExperiment-class

RangedSummarizedExperiment objects

SummarizedExperiment-class

SummarizedExperiment objects

coverage-methods

Coverage of a RangedSummarizedExperiment object

findOverlaps-methods

Finding overlapping ranges in RangedSummarizedExperiment objects

inter-range-methods

Inter range transformations of a RangedSummarizedExperiment object

intra-range-methods

Intra range transformations of a RangedSummarizedExperiment object

makeSummarizedExperimentFromDataFrame

Make a RangedSummarizedExperiment from a data.frame or DataFrame

makeSummarizedExperimentFromExpressionSet

Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa

makeSummarizedExperimentFromLoom

Make a SummarizedExperiment from a '.loom' hdf5 file

nearest-methods

Finding the nearest range neighbor in RangedSummarizedExperiment objects

readKallisto

Input kallisto or kallisto bootstrap results.

SummarizedExperiment

SummarizedExperiment container

v1.20.0

Artistic-2.0

Authors

Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès

Initial release

SummarizedExperiment

Functions (12)

SummarizedExperiment

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