adegenet: repool – R documentation

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repool

Pool several genotypes into a single dataset

Description

The function repool allows to merge genotypes from different genind objects into a single 'pool' (i.e. a new genind). The markers have to be the same for all objects to be merged, but there is no constraint on alleles.

Usage

repool(..., list = FALSE)

Arguments

`...`	a list of genind objects, or a series of genind objects separated by commas
`list`	a logical indicating whether a list of objects with matched alleles shall be returned (TRUE), or a single genind object (FALSE, default).

Details

This function can be useful, for instance, when hybrids are created using hybridize, to merge hybrids with their parent population for further analyses. Note that repool can also reverse the action of seppop.

Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk

Examples

## Not run: 
## use the cattle breeds dataset
data(microbov)
temp <- seppop(microbov)
names(temp)
## hybridize salers and zebu -- nasty cattle
zebler <- hybridize(temp$Salers, temp$Zebu, n=40)
zebler
## now merge zebler with other cattle breeds
nastyCattle <- repool(microbov, zebler)
nastyCattle

## End(Not run)

adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3

GPL (>= 2)

Authors

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release