Phylogeny and quantitative traits of teleos fishes
This data set describes the phylogeny of 49 teleos fishes as reported by Rochet et al. (2000). It also gives life-history traits corresponding to these 49 species.
mjrochet is a list containing the 2 following objects :
is a character string giving the phylogenetic tree in Newick format.
is a data frame with 49 rows and 7 traits.
Variables of mjrochet$tab are the following ones : tm (age at
maturity (years)), lm (length at maturity (cm)), l05 (length at 5 per cent
survival (cm)), t05 (time to 5 per cent survival (years)), fb (slope of the
log-log fecundity-length relationship), fm (fecundity the year of maturity),
egg (volume of eggs (mm^3)).
This dataset replaces the former version in ade4.
Rochet, M. J., Cornillon, P-A., Sabatier, R. and Pontier, D. (2000) Comparative analysis of phylogenic and fishing effects in life history patterns of teleos fishes. Oikos, 91, 255–270.
## Not run:
if(require(ape) && require(phylobase)){
data(mjrochet)
tre <- read.tree(text=mjrochet$tre) # make a tree
traits <- log((mjrochet$tab))
## build a phylo4d
mjr <- phylo4d(tre, traits)
## see data
table.phylo4d(mjr,cex.lab=.5,show.node=FALSE,symb="square")
## perform Abouheif's test for each trait
mjr.tests <- abouheif.moran(mjr, nrep=499)
mjr.tests
}
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