Exploratory Analyses for the Phylogenetic Comparative Method
Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.
Abouheif's test based on Moran's I
The adephylo package
Fan-like phylogeny with possible representation of traits on tips
Phylogeny and quantative trait of carnivora
Phylogeny and quantitative traits of carnivora
DIstance-Based Assignment
Compute the distance of tips to the root
Compute some phylogenetic distance between tips
List direct descendants for all nodes of a tree
List tips descendings from all nodes of a tree
Phylogeny and quantitative traits of lizards
Phylogeny and quantitative traits of flowers
Low-level auxiliary functions for adephylo
Phylogeny and quantitative traits of teleos fishes
Computes Moran's index for a variable
Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
Orthonormal decomposition of variance
Phylogenetic and quantitative traits of amazonian palm trees
Phylogenetic principal component analysis
Phylogeny and quantitative traits of birds
Compute some phylogenetic proximities between tips
Find the shortest path between tips of a tree
Graphical display of phylogeny and traits
Define partitions of tips according from a tree
Phylogeny and quantitative traits of ungulates.
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