clusterProfiler: KEGG_path2extid – R documentation

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KEGG_path2extid

Description

query all genes in a KEGG pathway or module

Usage

KEGG_path2extid(
  keggID,
  species = sub("\\d+$", "", keggID),
  keggType = "Path",
  keyType = "kegg"
)

Arguments

`keggID`	KEGG ID, path or module ID
`species`	species
`keggType`	one of 'Path' or 'Module'
`keyType`	KEGG gene type, one of "ncbi-proteinid", "ncbi-geneid", "uniprot", or "kegg"

Value

extid vector

Author(s)

guangchuang yu

clusterProfiler

statistical analysis and visualization of functional profiles for genes and gene clusters

v3.18.1

Artistic-2.0

Authors

Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Initial release