clusterProfiler

Datasets gcSample contains a sample of gene clusters.

GSEA

Gff2GeneTable

KEGG_path2extid

bitr

bitr_kegg

browseKEGG

buildGOmap

statistical analysis and visualization of functional profiles for genes and gene clusters

Compare gene clusters functional profile

download_KEGG

dropGO

enrichDAVID

GO Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment GO categories after FDR control.

KEGG Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG categories with FDR control.

KEGG Module Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG Module categories with FDR control.

enrichWP

enricher

get_wp_organism

go2ont

go2term

gofilter

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level.

gseGO

gseKEGG

gseMKEGG

gseWP

idType

ko2name

merge_result

plotGOgraph

read.gmt

Objects exported from other packages

search_kegg_organism

simplify method

uniprot_get

viewKEGG function is for visualize KEGG pathways works with enrichResult object to visualize enriched KEGG pathway