clusterProfiler: search_kegg_organism – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

search_kegg_organism

Description

search kegg organism, listed in http://www.genome.jp/kegg/catalog/org_list.html

Usage

search_kegg_organism(str, by = "scientific_name", ignore.case = FALSE)

Arguments

`str`	string
`by`	one of 'kegg.code', 'scientific_name' and 'common_name'
`ignore.case`	TRUE or FALSE

Value

data.frame

Author(s)

Guangchuang Yu

clusterProfiler

statistical analysis and visualization of functional profiles for genes and gene clusters

v3.18.1

Artistic-2.0

Authors

Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Initial release