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R
coloc

coloc.abf.datasets

Bayesian colocalisation analysis using data.frames

Description

Bayesian colocalisation analysis using data.frames

Usage

coloc.abf.datasets(df1, df2, snps = intersect(setdiff(colnames(df1),
  response1), setdiff(colnames(df2), response2)), response1 = "Y",
  response2 = "Y", ...)

Arguments

df1

dataset 1
df2

dataset 2
snps

col.names for snps
response1

col.name for response in dataset 1
response2

col.name for response in dataset 2
...

parameters passed to coloc.abf.snpStats

Details

Converts genetic data to snpStats objects, generates p values via score tests, then runs coloc.abf

Value

output of coloc.abf

Author(s)

Chris Wallace

coloc

Colocalisation Tests of Two Genetic Traits

v3.2-1
GPL
Authors
Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Initial release
2019-05-16

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