coloc

Var.data

Var.data

Internal function, approx.bf.estimates

Internal function, approx.bf.p

Bayes factors to compare specific values of eta

Classes "coloc" and "colocBayes"

Colocalisation tests of two genetic traits

Fully Bayesian colocalisation analysis using Bayes Factors

Bayesian colocalisation analysis using data.frames

Bayesian colocalisation analysis using snpStats objects

Wrapper to use colocalization testing within a Bayesian model averaging structure.

Function to do colocalisation tests of two traits

Colocalisation testing using regression coefficients

Class "colocABF" holds objects returned by the coloc.abf function

Class "colocPCs"

combine.abf

Methods to extract information from a coloc or colocBayes object

Impute missing genotypes

Bayesian finemapping analysis

logdiff

logsum

pcs.model

Functions to prepare principle component models for colocalisation testing

Plotting functions for the coloc package

process.dataset

Estimate trait variance, internal function