coloc: combine.abf – R documentation

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combine.abf

Internal function, calculate posterior probabilities for configurations, given logABFs for each SNP and prior probs

combine.abf(l1, l2, p1, p2, p12)

`l1`	merged.df$lABF.df1
`l2`	merged.df$lABF.df2
`p1`	prior probability a SNP is associated with trait 1, default 1e-4
`p2`	prior probability a SNP is associated with trait 2, default 1e-4
`p12`	prior probability a SNP is associated with both traits, default 1e-5

named numeric vector of posterior probabilities

Claudia Giambartolomei, Chris Wallace

Colocalisation Tests of Two Genetic Traits

v3.2-1

GPL

Authors

Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]

Initial release

2019-05-16