Impute missing genotypes
Impute missing genotypes in a snpMatrix object in each SNP in turn, conditional on all the others.
fillin(X, bp = 1:ncol(X), strata = NULL)
X |
a snpMatrix object |
bp |
optional vector giving basepair positions of the SNPs |
strata |
optional vector giving stratificiation of the samples, one entry for each sample, and samples with the same value are assumed to come from a single strata |
a numeric matrix of imputed genotypes, 0,2 = homs, 1 = het
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