Used to plot the RAD, slope and FoG parameter results
This function creates a pdf figure of plots showing the results of the imageJ analysis for resistance (RAD), tolerance (FoG), and sensitivity (slope).
threeParamPlot(projectName, type, RAD = "RAD20", FoG = "FoG20", RADmin = 30, slopeMax = 160, tolMax = 100, width = 6, height = 4, xlabels = "line", xlabAngle = NA, order = NA, orderFactor = "line", overwrite = TRUE, savePDF = TRUE, popUp = TRUE)
projectName |
the short name to be used for the project |
type |
specify whether the dataset to use is a dataframe with all data ("df") or an aggregated dataframe ("ag") |
RAD |
specify the RAD (radius) parameter to be plotted ("RAD20", "RAD50" or "RAD80"), default = "RAD20". |
FoG |
specify the FoG (fraction of growth) parameter to be plotted ("FoG20", "FoG50" or "FoG80"), default = "FoG20". |
RADmin |
minimum distance from the disk for resistance plot (minimum y axis value), default = 30. |
slopeMax |
maximum y axis value for slope (sensitivity) plot |
tolMax |
maximum y axis value for tolerance plot. Note tolerance is coverted to a percent, default = 100. |
width |
a numeric value indicating the width of the pdf file generated |
height |
a numeric value indicating the height of the pdf file generated |
xlabels |
either a vector containing the desired x-axis labels, or a single value indicating the column name that contains the values to use (likely either the 'line' column or one of the type columns), default = "line". |
xlabAngle |
indicates whether to print the x axis labels on a angle, if a number is provided this will be the angle used. The defauilt is not to plot on an angle, default = NA. |
order |
can be either "factor" or "custom". If custom, supply a numberial vector the same length as the dataframe to indicate the desired order. If factor, supply the column name in |
orderFactor |
if |
overwrite |
a logical value indicating whether to overwrite existing figures created on the same day for the same project name |
savePDF |
a logical value indicating whether to save a PDF file or open a new quartz window. Defaults to TRUE (saves a pdf file). |
popUp |
a logical value indicating whether to pop up the figure after it has been created |
Basic parameter plotting functions for three parameter plots (RAD, FoG , slope). Input can be the dataframe from either createDataframe type="df" or from aggregateData type=="ag". The default is to plot tolerance as a barplot and RAD and slope as a dotplot; tolerance can also be plotted as a dotplot with barplot=FALSE though there is currently not support to plot either RAD or slope as a barplot in this framework.
Either a pdf figure figure saved to the 'figures' directory ("projectName_RAD-slope-FoG.pdf" or a figure on screen
oneParamPlot for a similar figure with one parameter and twoParamPlot for a similar figure with two parameters
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