graph

Depth First Search

KEGG Integrin Mediated Cell Adhesion graph

A graph encoding parts of the MAPK signaling pathway

EXPERIMENTAL class "MultiGraph"

Methods for Accessibility Lists

addEdge

addNode

Methods for finding the adjacency list for selected nodes.

Compute an Adjacency Matrix for a graphBAM object

KEGG apoptosis pathway graph

Class "attrData"

Get and set attributes values for items in an attrData object

Get and set the default attributes of an attrData object

Calculate the average number of edges in a graph

A graph representing the Bioconductor package repository

Returns the Boundary between a Graph and a SubGraph

Calculate the hypergeometric probability of the subgraph's number of edges.

Calculate the probability that a subgraph has an unusual number of edges.

clearNode

Class "clusterGraph"

Clustering coefficient of a graph

combineNodes

Defunct Functions in Package graph

Class "distGraph"

duplicatedEdges

Get and set attributes for the edges of a graph object

Get and set default attributes for the edges of a graph

Compute an Edge Matrix or weight vector for a Graph

MultiGraph edgeSet data

Retrieve the edge weights of a graph

Methods for GXL manipulations in package graph

Class "graph"

Coercion methods between graphs and sparse matrices

Class "graphAM"

EXPERIMENTAL class "graphBAM"

A List Of Example Graphs

Class "graphNEL"

Generic Method inEdges

Variables used for internal purposes

Determine if nodes share an edge in a graph

Determine if a graph has directed or undirected edges

Find the leaves of a graph

List the Edges of a Graph

Coercions between matrix and graph representations

Find the node in a graph with the greatest number of edges

Class "multiGraph"

Get and set attributes for the nodes of a graph object

Get and set default attributes for the nodes of a graph

Calculate the number of nodes that have an edge list of NULL

A graph encoding parts of the pancreatic cancer initiation pathway

Random Edge Graph

Random Graph

Generate Random Graph with Specified Degree Distribution

removeEdge

removeNode

Class "renderInfo"

Reverse the edges of a directed graph

Graphical parameters and other settings

Class "simpleEdge".

Standard labeling of edges with integers

Create a Subgraph

Methods for Function toDotR, using R to generate a dot serialization

Translate a graph to "dot" including rendering information

Underlying Graph

Test whether graph object is valid

Write a graph object in a file in the Tulip format