KEGG apoptosis pathway graph
A graph representing the apoptosis pathway from
KEGG, as well as a data.frame of attributes for use in plotting the
graph with Rgraphviz and a list to compare the nodes with their
respective LocusLink IDs.
data(apopGraph)
The apopGraph data set contains three objects:
The first is apopGraph, which is an object of class
graph-NEL and represents the hsa04210 graph from KEGG.
The second is apopAttrs, which is a data.frame with two columns,
and a row for every node in apopGraph. The first column lists
what color the node is represented with on the KEGG site. The
second column lists the type of the node - either genesym or
text. Most nodes are of type genesym as they represent
genes, but some of the nodes in the KEGG graph were not genes
and thus those nodes are of type text.
The third, apopLocusLink is a named list where the names
correspond to the node names in apopGraph. The values of the
list are the LocusLink IDs that correspond to that node in the KEGG graph.
data(apopGraph)
if (require("Rgraphviz") & interactive())
plot(apopGraph)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.