Performs sample stratification based on signature contribution and enrichment analysis.
Performs k-means clustering to assign signature to samples and performs enrichment analysis. Note - Do not use this function. This will be removed in future updates.
signatureEnrichment(maf, sig_res, minMut = 5, useCNV = FALSE, fn = NULL)
maf |
an |
sig_res |
Signature results from |
minMut |
Consider only genes with minimum this number of samples mutated. Default 5. |
useCNV |
whether to include copy number events. Only applicable when MAF is read along with copy number data. Default TRUE if available. |
fn |
basename for output file. Default NULL. |
result list containing p-values
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