maftools: tmb – R documentation

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tmb

Estimate Tumor Mutation Burden

Estimates Tumor Mutation Burden in terms of per megabases

tmb(maf, captureSize = 50, logScale = TRUE)

`maf`	maf `MAF` object
`captureSize`	capture size for input MAF in MBs. Default 50MB.
`logScale`	Default TRUE. For plotting purpose only.

data.table with TMB for every sample

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tmb(maf = laml)

Summarize, Analyze and Visualize MAF Files

v2.6.05

MIT + file LICENSE

Authors

Anand Mayakonda [aut, cre] (<https://orcid.org/0000-0003-1162-687X>)

Initial release

2015-12-14