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pruning

Prune tree to match community data or trait data

Description

Prune a phylogenetic tree to include only species present in a community data set or with non-missing trait data

Usage

prune.sample(samp, phylo)
prune.missing(x, phylo)

Arguments

phylo

phylo object

samp

Community data matrix

x

Vector of trait data

Value

Returns a pruned phylo object

Author(s)

Steven Kembel <steve.kembel@gmail.com>

picante

Integrating Phylogenies and Ecology

v1.8.2
GPL-2
Authors
Steven W. Kembel <steve.kembel@gmail.com>, David D. Ackerly <dackerly@berkeley.edu>, Simon P. Blomberg <s.blomberg1@uq.edu.au>, Will K. Cornwell <cornwell@zoology.ubc.ca>, Peter D. Cowan <pdc@berkeley.edu>, Matthew R. Helmus <mrhelmus@wisc.edu>, Helene Morlon <morlon.helene@gmail.com>, Campbell O. Webb <cwebb@oeb.harvard.edu>
Initial release
2020-06-08

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