EUBON taxonomy search
EUBON taxonomy search
eubon_search( query, providers = "pesi", searchMode = "scientificNameExact", addSynonymy = FALSE, addParentTaxon = FALSE, timeout = 0, dedup = NULL, limit = 20, page = 1, ... )
query |
(character) The scientific name to search for. For example: "Bellis perennis", "Prionus" or "Bolinus brandaris". This is an exact search so wildcard characters are not supported |
providers |
(character) A list of provider id strings concatenated by comma characters. The default : "pesi,bgbm-cdm-server[col]" will be used if this parameter is not set. A list of all available provider ids can be obtained from the '/capabilities' service end point. Providers can be nested, that is a parent provider can have sub providers. If the id of the parent provider is supplied all subproviders will be queried. The query can also be restricted to one or more subproviders by using the following syntax: parent-id[sub-id-1,sub-id2,...] |
searchMode |
(character) Specifies the searchMode. Possible search
modes are: |
addSynonymy |
(logical) Indicates whether the synonymy of the accepted
taxon should be included into the response. Turning this option on may
cause an increased response time. Default: |
addParentTaxon |
(logical) Indicates whether the the parent taxon of
the accepted taxon should be included into the response. Turning this option
on may cause a slightly increased response time. Default: |
timeout |
(numeric) The maximum of milliseconds to wait for responses from any of the providers. If the timeout is exceeded the service will just return the responses that have been received so far. The default timeout is 0 ms (wait for ever) |
dedup |
(character) Allows to deduplicate the results by making use of a deduplication strategy. The deduplication is done by comparing specific properties of the taxon:
|
limit |
(numeric/integer) number of records to retrieve. default: 20.
This only affects the search mode |
page |
(numeric/integer) page to retrieve. default: 1. This only
affects the search mode |
... |
Curl options passed on to crul::verb-GET |
https://cybertaxonomy.eu/eu-bon/utis/1.3/doc.html
Other eubon-methods:
eubon_capabilities()
,
eubon_children()
,
eubon_hierarchy()
## Not run: eubon_search("Prionus") eubon_search("Salmo", "pesi") eubon_search("Salmo", c("pesi", "worms")) eubon_search("Salmo", "worms", "scientificNameLike") eubon_search("Salmo", "worms", "scientificNameLike", limit = 3) eubon_search("Salmo", "worms", "scientificNameLike", limit = 20, page = 2) eubon_search("Salmo", "worms", addSynonymy = TRUE) eubon_search("Salmo", "worms", addParentTaxon = TRUE) ## End(Not run)
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