taxize

Get APG names

MOBOT family names

Lookup in the APGIII taxonomy and replace family names

MOBOT order names

Barcode of Life taxonomic children

Retrieve all taxa names downstream in hierarchy for BOLD

Search Barcode of Life for taxonomic IDs

Retrieve immediate children taxa for a given taxon name or ID.

Convert a list of classifications to a tree.

Retrieve the taxonomic hierarchy for a given taxon ID.

COL defunct functions

Get scientific names from common names.

Retrieve the downstream taxa for a given taxon name or ID.

Given the identifier for a data object, return all metadata about the object

Retrieve the taxonomic hierarchy from given EOL taxonID.

Search for presence of taxonomic names in EOL invasive species databases.

Search for pages in EOL database using a taxonconceptID.

Search for terms in EOL database.

DEFUNCT

EUBON capabilities

EUBON children

EUBON hierarchy

EUBON taxonomy search

Index Fungorum

Retrieve all taxonomic names downstream in hierarchy for GBIF

Lookup details for specific names in all taxonomies in GBIF.

Parse taxon names using the GBIF name parser.

Get NCBI taxonomy UID from GenBankID

Get the BOLD (Barcode of Life) code for a search term.

Get the EOL ID from Encyclopedia of Life from taxonomic names.

Get the GBIF backbone taxon ID from taxonomic names.

Retrieve gene sequences from NCBI by accession number.

Retrieve gene sequences from NCBI by accession number.

Details on get_*() functions

Retrieve taxonomic identifiers for a given taxon name.

Get a IUCN Redlist taxon

Get NatureServe taxonomic ID for a taxon name

Get the UK National Biodiversity Network ID from taxonomic names.

Get Kew's Plants of the World code for a taxon

Retrieve gene sequences from NCBI by accession number.

Get the OTT id for a search term

Get the NameID codes from Tropicos for taxonomic names.

Get the TSN code for a search term.

Get the uBio id for a search term

Get the UID codes from NCBI for taxonomic names.

Get the page name for a Wiki taxon

Get Worms ID for a taxon name

Function to get API key.

Check invasive species status for a set of species from GISD database

Parse scientific names using Global Names Parser

Search for taxonomic name details using the Global Names Index

Parse scientific names using EOL's name parser.

Search for taxonomic names using the Global Names Index

Global Names Resolver Data Sources

Resolve names using Global Names Resolver

Taxonomic IDs to taxonomic names

ION - Index to Organism Names

iPlant name resolution

Search for names in the International Plant Names Index (IPNI).

Retrieve accepted TSN and name

Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.

Get full ITIS record for one or more ITIS TSN's or lsid's.

ITIS hierarchy

Get kingdom names

Get TSN from LSID

Get taxonomic names for a given taxonomic name query.

Get jurisdiction data, i.e., native or not native in a region.

Get references related to a ITIS TSN.

Retrieve taxonomic rank name from given TSN.

Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.

Get any matching IUCN species names

Get an ID for a IUCN listed taxon

Extractor functions for iucn-class.

Get a summary from the IUCN Red List

DEFUNCT

Helpers to set up authentication for the different providers.

Print a subset of a character vector

Retrieve the lowest common taxon and rank for a given taxon name or ID

Get a random vector of species names.

Search UK National Biodiversity Network database for taxonomic classification

Search UK National Biodiversity Network

Return all synonyms for a taxon name with a given id from NBN

Search NCBI for children of a taxon

Retrieve all taxa names downstream in hierarchy for NCBI

NCBI taxon information from uids

Retrieve gene sequences from NCBI by accession number.

Retrieve gene sequences from NCBI by taxon name and gene names.

Search for gene sequences available for taxa from NCBI.

Get family names to make Phylomatic input object, and output input string to Phylomatic for use in the function phylomatic_tree.

Query Phylomatic for a phylogenetic tree.

Ping an API used in taxize to see if it's working.

Vector of plant genus names from ThePlantList

Vector of plant species (genus - specific epithet) names from ThePlantList

Search for taxonomy data from Plantminer.com

Lookup taxa in Kew's Plants of the World

Search Kew's Plants of the World

Lookup synonyms in Kew's Plants of the World

methods for preparing/printing info for prompts for get_* functions

Lookup-table for IDs of taxonomic ranks

Lookup-table for IDs of taxonomic ranks (WoRMS)

Aggregate data by given taxonomic rank

Resolve names from different data sources

Get common names from scientific names.

Resolve names using Global Names Recognition and Discovery.

Species names from Species Plantarum

Get HTTP status codes

Retrieve synonyms from various sources given input taxonomic names or identifiers

Aggregate species data to given taxonomic rank

Get taxonomic names for a given rank

Get rank for a given taxonomic name.

taxize authentication

Defunct functions in taxize

Taxonomic Information from Around the Web

taxize parameters

Capitalize the first letter of a character string.

Get citations and licenses for data sources used in taxize

Replacement function for ldply that should be faster in all cases.

taxize options

Last taxon state object from a get_* function call

Keep track of queries in get_* functions

Lookup-table for family, genus, and species names for ThePlantList

Phylotastic Taxonomic Name Resolution Service.

TNRS sources

Resolve names using Open Tree of Life (OTL) resolver

Return all accepted names for a taxon name with a given id.

Return all accepted names for a taxon name with a given id.

Return all synonyms for a taxon name with a given id.

Return all distribution records for for a taxon name with a given id.

Return all distribution records for for a taxon name with a given id.

Return all reference records for for a taxon name with a given id.

Return all reference records for for a taxon name with a given id.

Search Tropicos by scientific name, common name, or Tropicos ID.

Return summary data a taxon name with a given id.

Return all synonyms for a taxon name with a given id.

Get The Plant List families.

Get The Plant List csv files.

A light wrapper around the taxonstand fxn to call Theplantlist.org database.

uBio classification

This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the given NamebankID

Search uBio by namebank ID.

uBio ping

This function will return NameBankIDs that match given search terms

Search uBio for taxonomic synonyms by hierarchiesID.

Retrieve the upstream taxa for a given taxon name or ID.

use eol

Search the CANADENSYS Vascan API.

Retrieve all taxa names downstream in hierarchy for WORMS

WORMS ranks