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fungorum

Index Fungorum


Description

Search for taxonomic names in Index Fungorum

Usage

fg_name_search(q, anywhere = TRUE, limit = 10, ...)

fg_author_search(q, anywhere = TRUE, limit = 10, ...)

fg_epithet_search(q, anywhere = TRUE, limit = 10, ...)

fg_name_by_key(key, ...)

fg_name_full_by_lsid(lsid, ...)

fg_all_updated_names(date, ...)

fg_deprecated_names(date, ...)

Arguments

q

(character) Query term

anywhere

(logical) Default: TRUE

limit

(integer) Number of results to return. max limit value appears to be 6000, not positive about that though

...

Curl options passed on to crul::verb-GET

key

(character) A IndexFungorum taxon key

lsid

(character) an LSID, e.,g. "urn:lsid:indexfungorum.org:names:81085"

date

(character) Date, of the form YYYMMDD

Value

A data.frame, or NULL if no results

References

http://www.indexfungorum.org/, API docs: http://www.indexfungorum.org/ixfwebservice/fungus.asmx

Examples

## Not run: 
# NameSearch
fg_name_search(q = "Gymnopus", limit = 2, verbose = TRUE)
fg_name_search(q = "Gymnopus")

# EpithetSearch
fg_epithet_search(q = "phalloides")

# NameByKey
fg_name_by_key(17703)

# NameFullByKey
fg_name_full_by_lsid("urn:lsid:indexfungorum.org:names:81085")

# AllUpdatedNames
fg_all_updated_names(date = gsub("-", "", Sys.Date() - 2))

# DeprecatedNames
fg_deprecated_names(date=20151001)

# AuthorSearch
fg_author_search(q = "Fayod", limit = 2)

## End(Not run)

taxize

Taxonomic Information from Around the Web

v0.9.100
MIT + file LICENSE
Authors
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>), Eduard Szoecs [aut], Zachary Foster [aut, cre], Zebulun Arendsee [aut], Carl Boettiger [ctb], Karthik Ram [ctb], Ignasi Bartomeus [ctb], John Baumgartner [ctb], James O'Donnell [ctb], Jari Oksanen [ctb], Bastian Greshake Tzovaras [ctb], Philippe Marchand [ctb], Vinh Tran [ctb], Maëlle Salmon [ctb], Gaopeng Li [ctb], Matthias Grenié [ctb], rOpenSci [fnd] (https://ropensci.org/)
Initial release

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