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rank_ref

Lookup-table for IDs of taxonomic ranks


Description

data.frame of 46 rows, with 2 columns:

  • rankid - a numeric rank id, consecutive

  • ranks - a comma separated vector of names that are considered equal to one another within the row

Details

We use this data.frame to do data sorting/filtering based on the ordering of ranks.

Please let us know if there is a rank that occurs from one of the data sources taxize that we don't have in rank_ref dataset.

Let us know if you disagree with the ordering of ranks.

Note that rankid 280 are essentially "genetic variants"; placed just above 'unspecified' to denote they're not without rank, but they're not really taxonomic ranks either. As far as I know there's no way to delineate among these "genetic variant" types.


taxize

Taxonomic Information from Around the Web

v0.9.100
MIT + file LICENSE
Authors
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>), Eduard Szoecs [aut], Zachary Foster [aut, cre], Zebulun Arendsee [aut], Carl Boettiger [ctb], Karthik Ram [ctb], Ignasi Bartomeus [ctb], John Baumgartner [ctb], James O'Donnell [ctb], Jari Oksanen [ctb], Bastian Greshake Tzovaras [ctb], Philippe Marchand [ctb], Vinh Tran [ctb], Maëlle Salmon [ctb], Gaopeng Li [ctb], Matthias Grenié [ctb], rOpenSci [fnd] (https://ropensci.org/)
Initial release

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