Get common names from scientific names.
Get common names from scientific names.
sci2comm(...) ## Default S3 method: sci2comm(sci, db = "ncbi", simplify = TRUE, scinames = NULL, ...) ## S3 method for class 'uid' sci2comm(id, ...) ## S3 method for class 'tsn' sci2comm(id, simplify = TRUE, ...) ## S3 method for class 'wormsid' sci2comm(id, simplify = TRUE, ...) ## S3 method for class 'iucn' sci2comm(id, simplify = TRUE, ...)
... |
Further arguments passed on to functions |
sci |
character; One or more scientific names or partial names. |
db |
character; Data source, one of |
simplify |
(logical) If TRUE, simplify output to a vector of names.
If FALSE, return variable formats from different sources, usually a
data.frame. Only applies to eol and itis. Specify |
scinames |
Deprecated, see |
id |
character; identifiers, as returned by |
List of character vectors, named by input taxon name,
or taxon ID. character(0) on no match
See taxize-authentication for help on authentication
We hard code http_version = 2L to use HTTP/1.1 in HTTP requests to
the Entrez API. See curl::curl_symbols('CURL_HTTP_VERSION')
Scott Chamberlain
## Not run:
sci2comm(sci='Helianthus annuus')
sci2comm(sci='Helianthus annuus', db='eol')
sci2comm(sci=c('Helianthus annuus', 'Poa annua'))
sci2comm(sci='Puma concolor', db='ncbi')
sci2comm('Gadus morhua', db='worms')
sci2comm('Pomatomus saltatrix', db='worms')
sci2comm('Loxodonta africana', db='iucn')
# Passing id in, works for sources: itis and ncbi, not eol
sci2comm(get_uid('Helianthus annuus'))
sci2comm(get_wormsid('Gadus morhua'))
sci2comm(get_iucn('Loxodonta africana'))
# Don't simplify returned
sci2comm(get_iucn('Loxodonta africana'), simplify=FALSE)
# Use curl options
sci2comm('Helianthus annuus', db="ncbi", verbose = TRUE)
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.