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taxize

taxize_options

taxize options

Description

taxize options

Usage

taxize_options(taxon_state_messages = NULL, ncbi_sleep = NULL, quiet = FALSE)

Arguments

taxon_state_messages

(logical) suppress messages? default: NULL (same as setting FALSE). Set to TRUE to suppress messages, and FALSE to not suppress messages
ncbi_sleep

(numeric/integer) number of seconds to sleep between NCBI ENTREZ http requests. applies to the functions: classification(), comm2sci(), genbank2uid(), get_uid() and ncbi_children(). defaults: 0.334 (without API key) or 0.101 (with API key). minimum value can not be less than 0.101
quiet

(logical) quiet informational output from this function. default: TRUE

Examples

## Not run: 
taxize_options()
taxize_options(FALSE)
taxize_options(TRUE)
taxize_options(ncbi_sleep = 0.4)
taxize_options(taxon_state_messages = TRUE, ncbi_sleep = 0.4)

## End(Not run)
taxize

Taxonomic Information from Around the Web

v0.9.100
MIT + file LICENSE
Authors
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>), Eduard Szoecs [aut], Zachary Foster [aut, cre], Zebulun Arendsee [aut], Carl Boettiger [ctb], Karthik Ram [ctb], Ignasi Bartomeus [ctb], John Baumgartner [ctb], James O'Donnell [ctb], Jari Oksanen [ctb], Bastian Greshake Tzovaras [ctb], Philippe Marchand [ctb], Vinh Tran [ctb], Maëlle Salmon [ctb], Gaopeng Li [ctb], Matthias Grenié [ctb], rOpenSci [fnd] (https://ropensci.org/)
Initial release

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