Resolve names using Open Tree of Life (OTL) resolver
Resolve names using Open Tree of Life (OTL) resolver
tol_resolve( names = NULL, context_name = NULL, do_approximate_matching = TRUE, ids = NULL, include_suppressed = FALSE, ... )
names |
(character) taxon names to be queried |
context_name |
name of the taxonomic context to be searched
(length-one character vector). Must match (case sensitive) one
of the values returned by |
do_approximate_matching |
(logical) A logical indicating whether or not
to perform approximate string (a.k.a. “fuzzy”) matching. Using |
ids |
An array of OTL ids to use for identifying names. These will be assigned to each name in the names array. If ids is provided, then ids and names must be identical in length. |
include_suppressed |
(logical) Ordinarily, some quasi-taxa, such as
incertae sedis buckets and other non-OTUs, are suppressed from TNRS
results. If this parameter is true, these quasi-taxa are allowed as
possible TNRS results. Default: |
... |
Curl options passed on to |
A data frame summarizing the results of the query. The
original query output is appended as an attribute to the
returned object (and can be obtained using
attr(object, "original_response")).
Francois Michonneau francois.michonneau@gmail.com Scott Chamberlain
https://github.com/OpenTreeOfLife/germinator/wiki/TNRS-API-v3#match_names
## Not run:
tol_resolve(names=c("echinodermata", "xenacoelomorpha",
"chordata", "hemichordata"))
tol_resolve(c("Hyla", "Salmo", "Diadema", "Nautilus"))
tol_resolve(c("Hyla", "Salmo", "Diadema", "Nautilus"),
context_name = "Animals")
turducken_spp <- c("Meleagris gallopavo", "Anas platyrhynchos",
"Gallus gallus")
tol_resolve(turducken_spp, context_name="Animals")
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.