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xmu_PadAndPruneForDefVars

Where all data are missing for a twin, add default values for definition variables, allowing the row to be kept


Description

Replaces NAs in definition slots with the mean for that variable ONLY where all data are missing for that twin.

Usage

xmu_PadAndPruneForDefVars(
  df,
  varNames,
  defNames,
  suffixes,
  highDefValue = 99,
  rm = c("drop_missing_def", "pad_with_mean")
)

Arguments

df

The dataframe to process

varNames

list of names of the variables being analysed

defNames

list of covariates

suffixes

that map names on columns in df (i.e., c("T1", "T2"))

highDefValue

What to replace missing definition variables (covariates) with. Default = 99

rm

= how to handle missing values in the varNames. Default is "drop_missing_def", "pad_with_mean")

Value

  • dataframe

See Also

Other xmu internal not for end user: umxModel(), umxRenameMatrix(), umx_APA_pval(), umx_fun_mean_sd(), umx_get_bracket_addresses(), umx_make(), umx_standardize(), umx_string_to_algebra(), umx, xmuHasSquareBrackets(), xmuLabel_MATRIX_Model(), xmuLabel_Matrix(), xmuLabel_RAM_Model(), xmuMI(), xmuMakeDeviationThresholdsMatrices(), xmuMakeOneHeadedPathsFromPathList(), xmuMakeTwoHeadedPathsFromPathList(), xmuMaxLevels(), xmuMinLevels(), xmuPropagateLabels(), xmuRAM2Ordinal(), xmuTwinSuper_Continuous(), xmuTwinSuper_NoBinary(), xmuTwinUpgradeMeansToCovariateModel(), xmu_CI_merge(), xmu_CI_stash(), xmu_DF_to_mxData_TypeCov(), xmu_bracket_address2rclabel(), xmu_cell_is_on(), xmu_check_levels_identical(), xmu_check_needs_means(), xmu_check_variance(), xmu_clean_label(), xmu_data_missing(), xmu_data_swap_a_block(), xmu_describe_data_WLS(), xmu_dot_make_paths(), xmu_dot_make_residuals(), xmu_dot_maker(), xmu_dot_move_ranks(), xmu_dot_rank_str(), xmu_extract_column(), xmu_get_CI(), xmu_lavaan_process_group(), xmu_make_TwinSuperModel(), xmu_make_bin_cont_pair_data(), xmu_make_mxData(), xmu_match.arg(), xmu_name_from_lavaan_str(), xmu_path2twin(), xmu_path_regex(), xmu_print_algebras(), xmu_rclabel_2_bracket_address(), xmu_safe_run_summary(), xmu_set_sep_from_suffix(), xmu_show_fit_or_comparison(), xmu_simplex_corner(), xmu_standardize_ACEcov(), xmu_standardize_ACEv(), xmu_standardize_ACE(), xmu_standardize_CP(), xmu_standardize_IP(), xmu_standardize_RAM(), xmu_standardize_SexLim(), xmu_standardize_Simplex(), xmu_start_value_list(), xmu_starts(), xmu_summary_RAM_group_parameters(), xmu_twin_add_WeightMatrices(), xmu_twin_check(), xmu_twin_get_var_names(), xmu_twin_make_def_means_mats_and_alg(), xmu_twin_upgrade_selDvs2SelVars()

Examples

## Not run: 
data(twinData)
sum(is.na(twinData$ht1))
df = xmu_PadAndPruneForDefVars(twinData, varNames = "ht", defNames = "wt", c("1", "2"))

## End(Not run)

umx

Structural Equation Modeling and Twin Modeling in R

v4.10.10
GPL-3
Authors
Timothy C. Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>), Gillespie Nathan [wit], Michael Zakharin [wit], Brenton Wiernik [ctb], Joshua N. Pritikin [ctb], Michael C. Neale [ctb], Hermine Maes [ctb]
Initial release
2021-11-30

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