Linear and Nonlinear Mixed Effects Models
Fit and compare Gaussian linear and nonlinear mixed-effects models.
Autocorrelation Function
Autocorrelation Function for gls Residuals
Autocorrelation Function for lme Residuals
Split-Plot Experiment on Varieties of Alfalfa
Bioassay on Cell Culture Plate
Rat weight over time for different diets
Pharmacokinetics of Cefamandole
Assign Values to Coefficients
Assign Covariate Values
Assign varFunc Covariate
High-Flux Hemodialyzer
Extract Dimensions from an Object
Dimensions of a corSpatial Object
Dimensions of a corStruct Object
Dimensions of a pdMat Object
Earthquake Intensity
Subscript a pdMat Object
Cracks caused by metal fatigue
Refinery yield of gasoline
Glucose levels over time
Glucose Levels Following Alcohol Ingestion
Methods for firing naval guns
Radioimmunoassay of IGF-I Protein
Initialize Object
Initialize corStruct Object
Initialize a glsStruct Object
Initialize an lmeStruct Object
Initialize reStruct Object
Initialize varFunc Object
Generate system matrix for LDEs
Productivity Scores for Machines and Workers
School demographic data for MathAchieve
Mathematics achievement scores
Assign Matrix Values
Assign Matrix to a pdMat or pdBlocked Object
Assign reStruct Matrices
Tenderness of meat
Protein content of cows' milk
Contraction of heart muscle sections
Names Associated with an Object
Extract Names from a formula
Names of a pdBlocked Object
Names of a pdMat Object
Names of an reStruct Object
Assay of nitrendipene
Split-plot Experiment on Varieties of Oats
Growth curve data on an orthdontic measurement
Counts of Ovarian Follicles
Heights of Boys in Oxford
Variability in Semiconductor Manufacturing
Effect of Phenylbiguanide on Blood Pressure
Phenobarbitol Kinetics
X-ray pixel intensities over time
Quinidine Kinetics
Evaluation of Stress in Railway Rails
The weight of rat pups
Assay for Relaxin
Pharmacokinetics of Remifentanil
Growth of soybean plants
Growth of Spruce Trees
Pharmacokinetics of tetracycline
Extract variance and correlation components
Calculate Semi-variogram
Calculate Semi-variogram for a corExp Object
Calculate Semi-variogram for a corGaus Object
Calculate Semi-variogram for a corLin Object
Calculate Semi-variogram for a corRatio Object
Calculate Semi-variogram for a corSpatial Object
Calculate Semi-variogram for a corSpher Object
Calculate Semi-variogram for Residuals from a gls Object
Calculate Semi-variogram for Residuals from an lme Object
Modeling of Analog MOS Circuits
Yields by growing conditions
Wheat Yield Trials
Extract Coefficients from a Set of Objects
Compare Likelihoods of Fitted Objects
Matrix of a corStruct Object
Matrix of a pdMat Object
Matrices of an reStruct Object
Combine Formulas of a Set of Objects
Convert groupedData to a matrix
Augmented Predictions
Create a groupedData object from a matrix
Language scores
Coefficients of a corStruct Object
Extract gnls Coefficients
Extract lmList Coefficients
Extract lme Coefficients
Extract modelStruct Object Coefficients
pdMat Object Coefficients
reStruct Object Coefficients
varFunc Object Coefficients
Collapse According to Groups
Collapse a groupedData Object
Compare Fitted Objects
Compare Predictions
AR(1) Correlation Structure
ARMA(p,q) Correlation Structure
Continuous AR(1) Correlation Structure
Correlation Structure Classes
Compound Symmetry Correlation Structure
Exponential Correlation Structure
Factor of a Correlation Matrix
Factor of a corStruct Object Matrix
Gaussian Correlation Structure
Linear Correlation Structure
Extract Correlation Matrix
Extract Correlation Matrix from a pdMat Object
Extract Correlation Matrix from Components of an reStruct Object
General correlation in natural parameterization
Rational Quadratic Correlation Structure
Spatial Correlation Structure
Spherical Correlation Structure
General Correlation Structure
Ergometrics experiment with stool types
Finite difference Hessian
Calculate glsStruct Fitted Values
Calculate gnlsStruct Fitted Values
Extract lmList Fitted Values
Extract lme Fitted Values
Calculate lmeStruct Fitted Values
Calculate nlmeStruct Fitted Values
Extract Fixed Effects
Extract lmList Fixed Effects
Extract pdBlocked Formula
Extract pdMat Formula
Extract reStruct Object Formula
Apply a Function by Groups
Extract Covariate from an Object
Extract corStruct Object Covariate
Extract Data Frame Covariate
Extract varFunc Covariate
Extract Covariates Formula
Extract Data from an Object
Extract gls Object Data
Extract lmList Object Data
Extract lme Object Data
Extract Grouping Factors from an Object
Extract corStruct Groups
Extract Groups from a Data Frame
Extract gls Object Groups
Extract lmList Object Groups
Extract lme Object Groups
Extract varFunc Groups
Extract Grouping Formula
Extract Response Variable from an Object
Extract Formula Specifying Response Variable
Extract variance-covariance matrix
Fit Linear Model Using Generalized Least Squares
Auxiliary functions used by gls
Control Values for gls Fit
Fitted gls Object
Generalized Least Squares Structure
Fit Nonlinear Model Using Generalized Least Squares
Control Values for gnls Fit
Fitted gnls Object
Generalized Nonlinear Least Squares Structure
Construct a groupedData Object
Summarize by Groups
Confidence Intervals on Coefficients
Confidence Intervals on gls Parameters
Confidence Intervals on lmList Coefficients
Confidence Intervals on lme Parameters
Check a Design for Balance
Check if Object is Initialized
List of lm Objects with a Common Model
lmList Fit from a groupedData Object
Linear Mixed-Effects Models
LME fit from groupedData Object
LME fit from lmList Object
Specifying Control Values for lme Fit
Fitted lme Object
Linear Mixed-Effects Structure
Extract the Logarithm of the Determinant
Extract corStruct Log-Determinant
Extract Log-Determinant from a pdMat Object
Extract reStruct Log-Determinants
Extract corStruct Log-Likelihood
Log-Likelihood of a glsStruct Object
Log-Likelihood of a gnls Object
Log-Likelihood of a gnlsStruct Object
Log-Likelihood of an lmList Object
Log-Likelihood of an lme Object
Log-Likelihood of an lmeStruct Object
Calculate reStruct Log-Likelihood
Extract varFunc logLik
reStruct Model Matrix
Check if Update is Needed
Check if a modelStruct Object Needs Updating
Nonlinear Mixed-Effects Models
NLME fit from nlsList Object
Control Values for nlme Fit
Fitted nlme Object
Nonlinear Mixed-Effects Structure
List of nls Objects with a Common Model
nlsList Fit from a selfStart Function
Pairs Plot of compareFits Object
Pairs Plot of an lmList Object
Pairs Plot of an lme Object
Positive-Definite Block Diagonal Matrix
Positive-Definite Matrix Classes
Positive-Definite Matrix with Compound Symmetry Structure
Construct pdMat Objects
Construct pdBlocked Objects
Diagonal Positive-Definite Matrix
Square-Root Factor of a Positive-Definite Matrix
Extract Square-Root Factor from Components of an reStruct Object
Multiple of the Identity Positive-Definite Matrix
General Positive-Definite Matrix
Positive-Definite Matrix
Extract Matrix or Square-Root Factor from a pdMat Object
Extract Matrix or Square-Root Factor from Components of an reStruct Object
General Positive-Definite Matrix in Natural Parametrization
Model function for the Phenobarb data
Plot an ACF Object
Plot a Variogram Object
Plot an augPred Object
Plot a compareFits Object
Plot a gls Object
Plot lmList Confidence Intervals
Plot an lmList Object
Plot an lme or nls object
Plot an nffGroupedData Object
Plot an nfnGroupedData Object
Plot an nmGroupedData Object
Plot a ranef.lmList Object
Plot a ranef.lme Object
Extract Pooled Standard Deviation
Predictions from a gls Object
Predictions from a gnls Object
Predictions from an lmList Object
Predictions from an lme Object
Predictions from an nlme Object
Print a summary.pdMat Object
Print a varFunc Object
Normal Plot of Residuals from a gls Object
Normal Plot of Residuals or Random Effects from an lme Object
Model function for the Quinidine data
Extract Random Effects
Extract lmList Random Effects
Extract lme Random Effects
Random Effects Structure
Recalculate Condensed Linear Model Object
Recalculate for corStruct Object
Recalculate for a modelStruct Object
Recalculate for an reStruct Object
Recalculate for varFunc Object
Extract gls Residuals
Calculate glsStruct Residuals
Calculate gnlsStruct Residuals
Extract lmList Residuals
Extract lme Residuals
Calculate lmeStruct Residuals
Calculate nlmeStruct Residuals
Simulate Results from lme Models
Calculate Inverse of a Positive-Definite Matrix
Apply Solve to an reStruct Object
Split a Formula
Summarize a corStruct Object
Summarize a Generalized Least Squares gls Object
Summarize an lmList Object
Summarize an lme Object
Summarize a modelStruct Object
Summarize an nlsList Object
Summarize a pdMat Object
Summarize "varFunc" Object
Update a modelStruct Object
Update varFunc Object
Variance Function Classes
Combination of Variance Functions
Constant Plus Power Variance Function
Constant Plus Proportion Variance Function
Exponential Variance Function
Fixed Variance Function
Variance Function Structure
Constant Variance Function
Power Variance Function
Extract Variance Function Weights
Variance Weights for glsStruct Object
Variance Weights for lmeStruct Object
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