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pander

An R 'Pandoc' Writer

Contains some functions catching all messages, 'stdout' and other useful information while evaluating R code and other helpers to return user specified text elements (like: header, paragraph, table, image, lists etc.) in 'pandoc' markdown or several type of R objects similarly automatically transformed to markdown format. Also capable of exporting/converting (the resulting) complex 'pandoc' documents to e.g. HTML, 'PDF', 'docx' or 'odt'. This latter reporting feature is supported in brew syntax or with a custom reference class with a smarty caching 'backend'.

Functions (126)

Pandoc-class

Reporting with Pandoc

Pandoc.brew

Brew in pandoc format

Pandoc.convert

Converts Pandoc to other format

add.blank.lines

Add trailing and leading blank line

add.lattice.grid

Add grids

add.lattice.xsubticks

Add subticks

add.minor.ticks

Minor tick marks

add.significance.stars

Add significance stars

brew

Patched brew

cache.off

Toggle cache

check_caption

Check if caption is valid

check_digits

Check if vector parameter for round/digits and adjust accodingly

coef_mat

Calculate coef matrix for models from rms package Forked from prModFit from rms

emphasize.rows

Emphasize rows/columns/cells

eval.msgs

Evaluate with messages

evals

Evaluate and Process R Code

evalsOptions

Querying/setting evals option

get.alignment

Get alignment

get.caption

Get caption

get.emphasize

Get emphasize params from internal buffer

get.storage

Get a value from internal buffer

has.rownames

Check if rownames are available

multitable

Create a multitable used for rendering objects from rms package

openFileInOS

Open file

p

Inline Printing

pander

Generic pander method

pander.Arima

Prints an arima object from stats package in Pandoc's markdown.

pander.CrossTable

Pander method for CrossTable class

pander.Date

Pander method for Date class

pander.NULL

Pander method for a NULL object

pander.POSIXct

Pander method for POSIXct class

pander.POSIXlt

Pander method for POSIXlt class

pander.anova

Pander method for anova class

pander.aov

Pander method for aov class

pander.aovlist

Pander method for aovlist class

pander.call

Pander method for call class

pander.cast_df

Pander method for cast_df class

pander.character

Pander method for character class

pander.clogit

Pander method for clogit class

pander.coxph

Pander method for coxph class

pander.cph

Prints an cph object from rms package in Pandoc's markdown.

pander.data.frame

Pander method for data.frame class

pander.data.table

Pander method for data.table class

pander.default

Default Pander method

pander.density

Pander method for density class

pander.describe

Pander method for describe class

pander.ets

Prints an ets object from forecast package in Pandoc's markdown.

pander.evals

Pander method for evals class

pander.factor

Pander method for factor class

pander.formula

Pander method for formula class

pander.ftable

Pander method for ftable class

pander.function

Pander method for function class

pander.glm

Pander method for summary.glm class

pander.glm.rms

Prints an Grm object from rms package in Pandoc's markdown.

pander.gtable

Pander method for gtable class

pander.htest

Pander method for htest class

pander.image

Pander method for image class

pander.irts

Prints an irts object from tseries package in Pandoc's markdown.

pander.list

Pander method for list class

pander.lm

Pander method for summary.lm class

pander.lme

Pander method for lme class

pander.logical

Pander method for logical class

pander.lrm

Prints an lrm object from rms package in Pandoc's markdown.

pander.manova

Pander method for manova class

pander.matrix

Pander method for matrix class

pander.microbenchmark

Pander method for microbenchmark class

pander.name

Pander method for name class

pander.nls

Prints an nls object from stats package in Pandoc's markdown.

pander.numeric

Pander method for numeric class

pander.ols

Prints an ols object from rms package in Pandoc's markdown.

pander.orm

Prints an orm object from rms package in Pandoc's markdown.

pander.polr

Prints an polr object from MASS package in Pandoc's markdown.

pander.prcomp

Pander method for prcomp class

pander.randomForest

Pander method for randomForest class

pander.rapport

Pander method for rapport class

pander.rlm

Pander method for rlm class

pander.sessionInfo

Pander method for sessionInfo class

pander.smooth.spline

Pander method for smooth.spline class

pander.stat.table

Pander method for stat.table class

pander.summary.aov

Pander method for summary.aov class

pander.summary.aovlist

Pander method for summary.aovlist class

pander.summary.glm

Pander method for summary.glm class

pander.summary.lm

Pander method for summary.lm class

pander.summary.lme

Pander method for summary.lme class

pander.summary.manova

Prints an summary.manova object from stats package in Pandoc's markdown.

pander.summary.nls

Prints an summary.nls object from stats package in Pandoc's markdown.

pander.summary.polr

Prints an summary.polr object from MASS package in Pandoc's markdown.

pander.summary.prcomp

Pander method for summary.prcomp class

pander.summary.rms

Prints an summary.rms from rms package in Pandoc's markdown.

pander.summary.survreg

Prints an survreg object from survival package in Pandoc's markdown.

pander.summary.table

Pander method for summary.table class

pander.survdiff

Pander method for survdiff class

pander.survfit

Pander method for survfit class

pander.survreg

Prints an survreg object from survival package in Pandoc's markdown.

pander.table

Pander method for table class

pander.tabular

Pander method for tabular class

pander.ts

Pander method for timeseries class

pander.vector

Helper function to deal with atomic vectors

pander.zoo

Pander method for zoo class

panderOptions

Querying/setting pander option

pander_return

Pander and capture output

pandoc.date.return

Dates

pandoc.emphasis.return

Emphasis

pandoc.footnote.return

Footnote

pandoc.formula.return

Formulas

pandoc.header.return

Create header

pandoc.horizontal.rule.return

Create horizontal rule

pandoc.image.return

Create pandoc image tags

pandoc.indent

Indent text

pandoc.link.return

Create pandoc link Pandoc's markdown format link.

pandoc.list.return

Create a list

pandoc.p.return

Paragraphs

pandoc.strikeout.return

Add strikeout

pandoc.strong.return

Strong emphasis

pandoc.table.return

Create a table

pandoc.title.return

Create title block

pandoc.verbatim.return

Add verbatim

redraw.recordedplot

Redraws plot saved in file

redrawPlot

Redraw a recordedplot, grid, trellis, or ggplot2 plot.

remove.extra.newlines

Remove more then two joined newlines

repChar

Repeating chars

set.alignment

Sets alignment for tables

set.caption

Adds caption in current block

splitLine

Split line with line breaks depending on max.width

trim.spaces

Trim leading and trailing spaces

wrap

Wrap Vector Elements

pander

An R 'Pandoc' Writer

v0.6.3
AGPL-3 | file LICENSE
Authors
Gergely Daróczi [aut, cre] (<https://orcid.org/0000-0003-3149-8537>), Roman Tsegelskyi [aut]
Initial release
2018-11-06

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