vegan

Barro Colorado Island Tree Counts

Canonical Correlation Analysis

Rotate First MDS Dimension Parallel to an External Variable

Mitchell-Olds \& Shaw Test for the Location of Quadratic Extreme

Adjusted R-square

Self-Starting nls Species-Area Models

Add or Drop Single Terms to a Constrained Ordination Model

Additive Diversity Partitioning and Hierarchical Null Model Testing

Permutational Multivariate Analysis of Variance Using Distance Matrices

Analysis of Similarities

Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates

Averaged Subsampled Dissimilarity Matrices

Beals Smoothing and Degree of Absence

Multivariate homogeneity of groups dispersions (variances)

Indices of beta Diversity

Coefficients of Biogeographical Dispersal Direction

Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities

PCA biplot

[Partial] Distance-based Redundancy Analysis

K-means partitioning using a range of values of K

[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis

Result Object from Constrained Ordination

Multinomial Species Classification Method (CLAM)

Create an Object for Null Model Algorithms

Contribution Diversity Approach

Detrended Correspondence Analysis and Basic Reciprocal Averaging

Standardization Methods for Community Ecology

Design your own Dissimilarities

Statistics Resembling Deviance and AIC for Constrained Ordination

Morisita index of intraspecific aggregation

Dispersion-based weighting of species counts

Connectedness of Dissimilarities

Ecological Diversity Indices

Vegetation and Environment in Dutch Dune Meadows.

Taxonomic Classification and Phylogeny of Dune Meadow Species

Extract Eigenvalues from an Ordination Object

Fits an Environmental Vector or Factor onto an Ordination

Scale Parameter at the Minimum of the Tsallis Evenness Profile

Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data

Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)

Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling

No-interaction Model for Hump-backed Species Richness vs. Biomass

Indicator Power of Species

Linear Model Diagnostics for Constrained Ordination

Isometric Feature Mapping Ordination

Kendall coefficient of concordance

Plots One-dimensional Diagrams without Overwriting Labels

Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name

Mantel and Partial Mantel Tests for Dissimilarity Matrices

Mantel Correlogram

Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores

Oribatid Mite Data with Explanatory Variables

Global and Local Non-metric Multidimensional Scaling and Linear and Hybrid Scaling

Multi Response Permutation Procedure and Mean Dissimilarity Matrix

Functions for performing and displaying a spatial partitioning of cca or rda results

Multiplicative Diversity Partitioning

Nestedness Indices for Communities of Islands or Patches

Extract the Number of Observations from a vegan Fit.

Null Model and Simulation

Evaluate Statistics with Null Models of Biological Communities

Support Functions for Drawing Vectors

Add Arrows and Line Segments to Ordination Diagrams

Display Groups or Factor Levels in Ordination Diagrams

Add Text on Non-transparent Label to an Ordination Plot.

Alternative plot and identify Functions for Ordination

Ordination Plots with Points and Optimized Locations for Text

Plots of Residuals and Fitted Values for Constrained Ordination

Choose a Model by Permutation Tests in Constrained Ordination

Fit and Plot Smooth Surfaces of Variables on Ordination.

Ordination Plot with Movable Labels

Add Text or Points to Ordination Plots

Trellis (Lattice) Plots for Ordination

Principal Coordinates of Neighbourhood Matrix

Matrix Permutation Algorithms for Presence-Absence and Count Data

Extract, Analyse and Display Permutation Results

Permutation tests in Vegan

Permutation test of multivariate homogeneity of groups dispersions (variances)

Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis

Principal Response Curves for Treatments with Repeated Observations

Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)

Procrustes Rotation of Two Configurations and PROTEST

Response of Aquatic Invertebrates to Insecticide Treatment

Rank – Abundance or Dominance / Diversity Models

Compares Dissimilarity Indices for Gradient Detection

Rarefaction Species Richness

Raup-Crick Dissimilarity with Unequal Sampling Densities of Species

Reads a CEP (Canoco) data file

Renyi and Hill Diversities and Corresponding Accumulation Curves

Reorder a Hierarchical Clustering Tree

Get Species or Site Scores from an Ordination

Screeplots for Ordination Results and Broken Stick Distributions

Similarity Percentages

Simulate Responses with Gaussian Error or Permuted Residuals for Constrained Ordination

Birds in the Archipelago of Sipoo (Sibbo and Borgå)

Minimum Spanning Tree

Species Accumulation Curves

Extrapolated Species Richness in a Species Pool

Add or Replace Species Scores in Distance-Based Ordination

Stepacross as Flexible Shortest Paths or Extended Dissimilarities

Display Ordination Distances Against Observed Distances in Eigenvector Ordinations

Indices of Taxonomic Diversity and Distinctness

Species tolerances and sample heterogeneities

Functional Diversity and Community Distances from Species Trees

Tsallis Diversity and Corresponding Accumulation Curves

Vegetation and environment in lichen pastures

Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices

Defunct Functions in Package vegan

Deprecated Functions in vegan package

Internal vegan functions

Community Ecology Package: Ordination, Diversity and Dissimilarities

Display vegan Documentation

Dissimilarity Indices for Community Ecologists

Display Compact Ordered Community Tables