RxODE

Create an ODE-based model specification

Add dosing to eventTable

Add sampling to eventTable

Convert an event table to a data.table

Coerce object to data.frame

Convert to tbl

Return the RxODE coefficients

Sample a covariance Matrix from the Posterior Inverse Wishart distribution.

Clear/Set pipeline

Finalize inner RxODE based on symengine saved info

Finalize RxODE pred based on symengine saved info

Generate pieces for EBE only problem

Generate the ETA sensitivities for FO related methods

Generate FOCE without interaction

Generate pieces for FOCEi inner problem

Get the state information for the current model

Generate the d(err)/d(eta) values for FO related methods

Generate Augmented pred/err RxODE model

Remove INIs

Remove print statements

Setup Rtools path

Temporarily set options then restore them while running code

With one sink, then release

Temporarily set options then restore them while running code

Register a method for a suggested dependency

Turn on/off warnings for ID sorting.

Event Table Function

Expand additional doses

Combining event tables

Repeat an RxODE event table

Sequence of event tables

Event translation for RxODE

Create an event table object

Find the assignments in R expression

Force using base order for RxODE radix sorting

Gammap: normalized lower incomplete gamma function

gammapDer: derivative of gammap

gammapInv and gammapInva: Inverses of normalized gammap function

Gammaq: normalized upper incomplete gamma function

gammaqInv and gammaqInva: Inverses of normalized gammaq function

Generate an example (template) of a dosing regimen shiny app

Get/Set the number of threads that RxODE uses

Empty Guide

One correlation sample from the Inverse Wishart distribution

Check to see if this is an rxEt object.

Check to see if this is an rxSolve object.

logit and inverse logit (expit) functions

lowergamma: upper incomplete gamma function

Cumulative distribution of standard normal

Update Solved object with '+'

Print information about the RxODE object.

Print the rxCoef object

Print rxDll object

probit and inverse probit functions

One correlation sample from the LKJ distribution

Objects exported from other packages

Scaled Inverse Chi Squared distribution

Add a return statment to a function.

Allow unloading of dlls

Assign pointer based on model variables

Creates a logical matrix for block matrixes.

Return the C file associated with the RxODE object

Use cat when RxODE.verbose is TRUE

rxChain Chain or add item to solved system of equations

Second command in chaining commands

Cleanup anonymous DLLs by unloading them

Compile a model if needed

Current Condition for RxODE object

This will create the cache directory for RxODE to save between sessions

Add to RxODE's derivative tables

Delete the DLL for the model

Calculate derived parameters for the 1-, 2-, and 3- compartment linear models.

Jacobian and parameter derivatives

Return the DLL associated with the RxODE object

Load RxODE object

Unload RxODE object

EVID formatting for tibble and other places.

Faster expand.grid

Expand if/else clauses into mutiple different types of lines.

Clear memoise cache for RxODE

Add user function to RxODE

Generate pred-only SAEM RxODE model

Get the linear compartment model true function

Get model properties without compiling it.

Get RxODE model from object

Format rxSolve and related objects as html.

Set the preferred factoring by state

This sets the inductive linearization strategy for matrix building

Initial Values and State values for a RxODE object

Invert matrix using RcppArmadillo.

Check the type of an object using Rcpp

Checks if the RxODE object was built with the current build

Determine if the DLL associated with the RxODE object is loaded

Left handed Variables

Lock/unlocking of RxODE dll file

Return the md5 of an RxODE object or file

All model variables for a RxODE object

Get the rxModels information

Get the normalized model

Optimize RxODE for computer evaluation

Parameters specified by the model

Prepare Error function for inclusion in RxODE

Parse PK function for inclusion in RxODE

Prepare Pred function for inclusion in RxODE

Returns a list of physical drives that have been or currently are mounted to the computer.

Creates a package from compiled RxODE models

Simulate a from a Poisson process

RxODE progress bar functions

Prune branches (ie if/else) from RxODE

Create a random "normal" matrix using vandercorput generator

Creates a rxRateDur object

Reload RxODE DLL

Require namespace, otherwise throw error.

A list and description of Rode supported reserved keywords

Simulate from a (truncated) multivariate normal

Load a model into a symengine environment

Setup Pred function based on RxODE object.

Set Initial conditions to time zero instead of the first observed/dosed time

Defunct setting of product

Set timing for progress bar

Silence some of RxODE's C/C++ messages

Defunct setting of sum

Setup the initial conditions.

Setup the initial conditions.

Use Shiny to help develop an RxODE model

Simulate Parameters from a Theta/Omega specification

Solving & Simulation of a ODE/solved system (and solving options) equation

Free the C solving/parsing information.

This function splits a function based on + or - terms

Stack a solved object for things like ggplot

State variables

Recast model in terms of sum/prod

Get list of supported functions

Respect suppress messages

Get Omega^-1 and derivatives

Creates an object for calculating Omega/Omega^-1 and derivatives

Return the dimension of the built-in derivatives/inverses

Sync options with RxODE variables

A list and description of Rode supported syntax functions

Get the RxODE temporary directory

rxTheme is the RxODE theme for plots

RxODE to symengine environment

Translate the model to C code if needed

Unloads all RxODE compiled DLLs

Use model object in your package

Validate RxODE This allows easy validation/qualification of nlmixr by running the testing suite on your system.

Version and repository for this dparser package.

Setup Windows components for RxODE

Simulate beta variable from threefry generator

Simulate Binomial variable from threefry generator

Simulate Cauchy variable from threefry generator

Simulate chi-squared variable from threefry generator

Simulate exponential variable from threefry generator

Simulate F variable from threefry generator

Simulate gamma variable from threefry generator

Simulate geometric variable from threefry generator

Simulate random normal variable from threefry/vandercorput generator

Wrap a test in RxODE

Simulate random Poisson variable from threefry generator

Simulate student t variable from threefry generator

Simulate uniform variable from threefry generator

Simulate Weibull variable from threefry generator

Dosing/Amt geom/stat

Censoring geom/stat

Print expanded information about the RxODE object.

Summary of rxDll object

uppergamma: upper incomplete gamma function